Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0714
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58250.1 68416.m06494 meprin and TRAF homology domain-contain...    31   0.68 
At1g43245.1 68414.m04985 expressed protein                             29   2.1  
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    29   3.6  
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    29   3.6  
At2g12130.1 68415.m01306 hypothetical protein                          28   6.4  
At2g38670.1 68415.m04749 ethanolamine-phosphate cytidylyltransfe...    27   8.4  
At1g49340.2 68414.m05531 phosphatidylinositol 3- and 4-kinase fa...    27   8.4  
At1g49340.1 68414.m05530 phosphatidylinositol 3- and 4-kinase fa...    27   8.4  

>At3g58250.1 68416.m06494 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 317

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 127 KQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVE 306
           K +  L +  +  D F+  G   +L  F +    K D + L ++ +  E L   W R  +
Sbjct: 16  KNFSSLQSEKIYSDQFVIDGCRWRLLAFPKGNDTKSDHLSLYLDVAESESLPCGWRRHAQ 75

Query: 307 DSFPIVN 327
            SF IVN
Sbjct: 76  FSFTIVN 82


>At1g43245.1 68414.m04985 expressed protein
          Length = 558

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 331 QEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMN 486
           QE +D +L  N+ P       + +  H ++++ED  PH  +R+    YV +N
Sbjct: 321 QEAIDDFLSDNIDPKTCCEMIESVLHHGIQFKEDSQPH-CLRLHACHYVALN 371


>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +1

Query: 58  KNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPD 237
           KNL   I+N++    ++     E  W L +   + E    G G N+KL +      +K D
Sbjct: 54  KNLFKRIENSEIALAVLSSRYTESHWCLQELVKMMECSMKGEGCNKKLLVIPIFYKLKID 113

Query: 238 TMKLIVNWSGKEFLRETWTR 297
           T+K +    G+  L + W +
Sbjct: 114 TVKELDGDFGRN-LWDLWRK 132


>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
            to eukaryotic translation elongation factor 2
            GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 154  MVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIVN 258
            M+ EDPF  P   +++  F +  SV P+T + ++N
Sbjct: 953  MLEEDPFFVPKTEEEIEEFGDGASVLPNTARKLIN 987


>At2g12130.1 68415.m01306 hypothetical protein
          Length = 209

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 376 VWV*GWRRGTRPSPLGRLQWGSCPQQNGSKFHAKTLC 266
           +W   WR    P  LGR  +G+C +     ++A+ LC
Sbjct: 170 LWNRSWRFVVSPDCLGRCSYGACCRNCFFYWYARELC 206


>At2g38670.1 68415.m04749 ethanolamine-phosphate
           cytidylyltransferase, putative / phosphorylethanolamine
           transferase, putative / CTP:phosphoethanolamine
           cytidylyltransferase, putative similar to SP|Q99447
           Ethanolamine-phosphate cytidylyltransferase (EC
           2.7.7.14) {Homo sapiens}; contains Pfam profile PF01467:
           Cytidylyltransferase
          Length = 421

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 475 VGMNNEYRISLAKKGGGCPIMNIH 546
           VG++N+  +S AK+G   PIMN+H
Sbjct: 286 VGIHNDQTVS-AKRGAHRPIMNLH 308


>At1g49340.2 68414.m05531 phosphatidylinositol 3- and 4-kinase family
            protein contains similarity to phosphatidylinositol
            4-kinase 230 GI:2326227 from [Homo sapiens], from [Bos
            taurus] GI:2198791; contains Pfam profiles PF00454:
            Phosphatidylinositol 3- and 4-kinase, PF00613:
            Phosphoinositide 3-kinase family, accessory domain
          Length = 2028

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -2

Query: 603  EVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVVHAHVGWLHNSDYFVGHVVFF 424
            E LPY    K +E   VL   +  WAA ++       F+  A+ G      Y +  +  +
Sbjct: 1530 EALPYFVTPKNVEENSVLLQQLPHWAACSITQALE--FLTPAYKGHPRVMAYVLRVLESY 1587

Query: 423  PPKSV 409
            PP+ V
Sbjct: 1588 PPERV 1592


>At1g49340.1 68414.m05530 phosphatidylinositol 3- and 4-kinase family
            protein contains similarity to phosphatidylinositol
            4-kinase 230 GI:2326227 from [Homo sapiens], from [Bos
            taurus] GI:2198791; contains Pfam profiles PF00454:
            Phosphatidylinositol 3- and 4-kinase, PF00613:
            Phosphoinositide 3-kinase family, accessory domain
          Length = 2028

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -2

Query: 603  EVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVVHAHVGWLHNSDYFVGHVVFF 424
            E LPY    K +E   VL   +  WAA ++       F+  A+ G      Y +  +  +
Sbjct: 1530 EALPYFVTPKNVEENSVLLQQLPHWAACSITQALE--FLTPAYKGHPRVMAYVLRVLESY 1587

Query: 423  PPKSV 409
            PP+ V
Sbjct: 1588 PPERV 1592


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,800
Number of Sequences: 28952
Number of extensions: 347531
Number of successful extensions: 1124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)