Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0713
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 56 5e-09
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 52 6e-08
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 48 2e-06
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 48 2e-06
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 44 3e-05
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 33 0.030
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac... 27 2.6
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 2.6
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 27 3.5
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 26 4.6
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 26 6.1
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 8.1
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 56.0 bits (129), Expect = 5e-09
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 8/188 (4%)
Frame = +1
Query: 154 SEQADTTSICSSVTTQPDRHGFFG-GAQYSPEPKRTVSPSTILKREQKWLRMLDNWEAFM 330
S+Q + +C +P+ +G GA+Y +S RE+ LRM +
Sbjct: 148 SKQFFSERLCKPNVPEPETKDSYGFGARYGYPTDPRIS------RERAKLRMWKEYFLLY 201
Query: 331 SKNYKKVR-----ERCRKGIPASVRPKAWLYLCGGQLLLEKHPNEYEELLQA-PGDPK-C 489
N +R + R +P +R + W G ++ +EY+ LL+ G
Sbjct: 202 GANLSLIRVSLFSKLVRIELPNKLRGEIWELTSGSMYFRLENSDEYDHLLKVYSGQTSFS 261
Query: 490 MEDIRKDLHRQFPYHEMFIREEGLGQQELFSVLKAYSVLNPKVGYFKHKPPVAAFLSCTC 669
+E+I KDL R P + + EEG+ L +VL A+S N +VGY + VAA L C
Sbjct: 262 LEEIEKDLGRSLPEYPAYQNEEGINA--LRNVLVAFSWKNQEVGYCQAMNIVAAALLIHC 319
Query: 670 PAVQAFLV 693
Q F +
Sbjct: 320 TEEQTFFL 327
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 52.4 bits (120), Expect = 6e-08
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Frame = +1
Query: 334 KNYKKVRERCRKGIPASVRPKAWLYLCGGQLLLEKHPNEYEELLQAPGDPKC--MEDIRK 507
K + K RE + G+P + K WL C G L P YEELL + + + I
Sbjct: 492 KRWHKFRELVKNGVPLCYKAKVWLE-CSGAYQLHS-PGYYEELLSRTDEVESASVAQIDM 549
Query: 508 DLHRQFPYHEMFIREEGLGQQELFSVLKAYSVLNPKVGYFKHKPPVAAFL 657
D++R + +F +G G +L +L AYS NP +GY + + AFL
Sbjct: 550 DINRTMAKN-VFFGGKGPGIPKLRRILVAYSRHNPHIGYCQGMNVIGAFL 598
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 346 KVRERCRKGIPASVRPKAWLYLCGGQLLLEKHPNEYEELLQAP--GDPKCMEDIRKDLHR 519
K + RKGIP R AW Y GG LL+++P YE L + P + I +DL+R
Sbjct: 292 KTQRFIRKGIPPEYRGNAWFYYSGGYELLQRNPKLYETLWRCACIKKPSDSDLIERDLYR 351
Query: 520 QFP 528
FP
Sbjct: 352 TFP 354
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 47.6 bits (108), Expect = 2e-06
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Frame = +1
Query: 277 LKREQKW-----LRMLDNWEAFMSKNYKKVRERCRKGIPASVRPKAWLYLCGGQLLLEKH 441
L R QKW + ++ + + +K+ R KGIP R AW L +K
Sbjct: 122 LSRIQKWKSMCSIHLVSGNQLHSFRKTRKLILRTFKGIPDCWRSIAWWSFLVDSLPDKKL 181
Query: 442 PNEYEELLQAPGDPKCMEDIRKDLHRQFPYHEMFIREEGLGQQELFSVLKAYSVLNPKVG 621
++Y +L + D D+ D+ R H +F + GQ+ LF VL A ++ P+VG
Sbjct: 182 IDKYYQLNEQICDYDVQIDL--DVPRTAATHFLFRKRYIGGQRLLFRVLHAVALYIPRVG 239
Query: 622 YFKHKPPVAAFLSCTCPAVQAFLV 693
Y + +AA L P QAF++
Sbjct: 240 YVQGMASIAATLLIYYPEEQAFIM 263
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 43.6 bits (98), Expect = 3e-05
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Frame = +1
Query: 313 NWEAFMSKNYKKVRERCRKGIPASVRPKAWLYLCGGQLLLE-KHPNEYEELLQAPGDPKC 489
N+ + N++K+ + GIP ++R W C G L K Y + + + + +C
Sbjct: 200 NFNLIQTPNFQKL---VQSGIPNNLRADIW-ETCSGSLFPRWKSKGFYAKNIDSVINNRC 255
Query: 490 --MEDIRKDLHRQFPYHEMFIREEGLGQQELFSVLKAYSVLNPKVGYFKHKPPVAAFLSC 663
E+I KDL R P + + G+ L +L YS N +VGY + V A L
Sbjct: 256 EYSEEIEKDLTRSLPDYPAYQSPTGINT--LRRILLFYSETNKEVGYCQAMNIVLAALLV 313
Query: 664 TCPAVQAFLVSRQ 702
C QA+ + Q
Sbjct: 314 YCTEEQAYFLFSQ 326
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 33.5 bits (73), Expect = 0.030
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Frame = +1
Query: 295 WLR-MLDNW-EAFMSKNYKKVRERCRKGIPASVRPKAWLYLCGGQLLLE----------- 435
W R +L NW +A S Y + R+GIP+ VR + W G L L+
Sbjct: 191 WEREILRNWPDALKSSRYAGI---WRQGIPSRVRGRVWEKAIGNNLKLDYQSFFNARANA 247
Query: 436 KHPNEYEELLQAPGDPKCMEDI---RKDLHRQFPYHEMFIREEGLGQQELFSVLKAYSVL 606
+ E+ Q + ED+ DL P++ +F EG +++L +L+AYS
Sbjct: 248 QKREAAEKAEQMNNANQFREDVCALELDLQSTMPHYSLF-HTEGPLRRDLIGLLRAYSYY 306
Query: 607 NPKVGYFKHKPPVAAFLSCTCPAVQAF 687
Y + A L AF
Sbjct: 307 RFDTSYIPGTSFIGALLLLNMNLTSAF 333
>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
Fba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/76 (22%), Positives = 36/76 (47%)
Frame = +1
Query: 304 MLDNWEAFMSKNYKKVRERCRKGIPASVRPKAWLYLCGGQLLLEKHPNEYEELLQAPGDP 483
MLD E +N +V+E C++ +P + + + + GG+ + N + + P
Sbjct: 141 MLDLSEEPKKENIAQVKEYCKRAVPMKIWIEMEIGITGGE--EDGVDNSHVSHTELYTQP 198
Query: 484 KCMEDIRKDLHRQFPY 531
+ + D+ ++L PY
Sbjct: 199 EDIWDVYRELSSVTPY 214
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 574 LFSVLKAYSVLNPKVGYFKHKPPVAAFLSCTCPAVQAF 687
L VL++ +++ P+VGY + +A L PA QAF
Sbjct: 685 LHRVLRSLAIVLPQVGYTQGMSWIAGALLMHLPAPQAF 722
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -3
Query: 419 PP--HRYNHAFGLTDAGIPFR-HLSRTFL*FLLINASQLSSIRSHFCSLFNIVLGETVLL 249
PP HR NH++G TD P L +F +L NA ++ ++ N E L
Sbjct: 54 PPNTHRENHSYGTTDNSSPLLIILLISFTSIILFNAPEVCYLKYKDAFFKNYGAAEWTLF 113
Query: 248 G 246
G
Sbjct: 114 G 114
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 419 PPHRYNHAFGLTDAGIPFRHLS 354
PP RY+HA G+T +G + S
Sbjct: 300 PPRRYSHANGVTTSGTTHSYTS 321
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 319 EAFMSKNYKKVRERCRKGIPASVRPKAWLYLCGGQLLLEK 438
E + Y ++ K P S RP+A L + QL+LEK
Sbjct: 421 EELENMKYLQIDTPESKEYPRSTRPRALLIVALSQLILEK 460
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 126 FCRDILLFFLTSSVFFYDRPSR 61
F +LLF + +VF+YD P++
Sbjct: 1057 FYHSLLLFLCSIAVFYYDGPNK 1078
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,606
Number of Sequences: 5004
Number of extensions: 62598
Number of successful extensions: 195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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