Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0713
(712 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02460.2 68416.m00234 plant adhesion molecule, putative stron... 82 3e-16
At3g02460.1 68416.m00233 plant adhesion molecule, putative stron... 82 3e-16
At5g15930.1 68418.m01863 plant adhesion molecule 1 (PAM1) identi... 80 2e-15
At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein si... 43 2e-04
At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein lo... 38 0.005
At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein lo... 34 0.081
At1g74720.1 68414.m08658 C2 domain-containing protein contains I... 32 0.43
At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co... 31 1.00
At3g59530.2 68416.m06644 strictosidine synthase family protein s... 29 4.0
At3g59530.1 68416.m06643 strictosidine synthase family protein s... 29 4.0
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 28 5.3
At5g44316.1 68418.m05426 ATP-binding-cassette transporter, putat... 28 7.0
At1g73400.1 68414.m08498 pentatricopeptide (PPR) repeat-containi... 28 7.0
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 23 8.2
At4g32190.1 68417.m04581 centromeric protein-related low similar... 27 9.3
>At3g02460.2 68416.m00234 plant adhesion molecule, putative strong
similarity to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 333
Score = 82.2 bits (194), Expect = 3e-16
Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Frame = +1
Query: 205 DRHGFFGGAQY-SPE--PKRTVSPSTILKREQ----KWLRML----DNWEAFMSKNYKKV 351
DR GF SPE K + ST RE+ KW +M+ +W+ ++ + V
Sbjct: 22 DRFGFLKQEHANSPERFSKSKTTSSTDHDREERKVRKWRKMIGVGGSDWKHYVRRKPNVV 81
Query: 352 RERCRKGIPASVRPKAWLYLCGGQLLLEKHPNEYEELLQAPGDPKCMEDIRKDLHRQFPY 531
R R RKGIP +R W + G + LL +P YE+L+ + DI +D+ R FP
Sbjct: 82 RRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYETSASEL-DIIRDISRTFPS 140
Query: 532 HEMFIREEGLGQQELFSVLKAYSVLNPKVGYFKHKPPVAAFL 657
H F + G GQ+ L++VLKAYSV + VGY + +A L
Sbjct: 141 HVFFQKRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLL 182
>At3g02460.1 68416.m00233 plant adhesion molecule, putative strong
similarity to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 353
Score = 82.2 bits (194), Expect = 3e-16
Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Frame = +1
Query: 205 DRHGFFGGAQY-SPE--PKRTVSPSTILKREQ----KWLRML----DNWEAFMSKNYKKV 351
DR GF SPE K + ST RE+ KW +M+ +W+ ++ + V
Sbjct: 22 DRFGFLKQEHANSPERFSKSKTTSSTDHDREERKVRKWRKMIGVGGSDWKHYVRRKPNVV 81
Query: 352 RERCRKGIPASVRPKAWLYLCGGQLLLEKHPNEYEELLQAPGDPKCMEDIRKDLHRQFPY 531
R R RKGIP +R W + G + LL +P YE+L+ + DI +D+ R FP
Sbjct: 82 RRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYETSASEL-DIIRDISRTFPS 140
Query: 532 HEMFIREEGLGQQELFSVLKAYSVLNPKVGYFKHKPPVAAFL 657
H F + G GQ+ L++VLKAYSV + VGY + +A L
Sbjct: 141 HVFFQKRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLL 182
>At5g15930.1 68418.m01863 plant adhesion molecule 1 (PAM1) identical
to plant adhesion molecule 1 [Arabidopsis thaliana]
GI:3511223; contains Pfam profile PF00566: TBC domain
Length = 356
Score = 79.8 bits (188), Expect = 2e-15
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Frame = +1
Query: 205 DRHGFFGGAQYSPEPKRTVSPSTIL-----KREQKWLRML----DNWEAFMSKNYKKVRE 357
DR GF S + T + S+I KR KW +M+ +W+ ++ + V+
Sbjct: 21 DRFGFLKQEHGSSPQRFTKTKSSINYEKEEKRVTKWRKMIGTGGSDWKHYVRRKPHVVKR 80
Query: 358 RCRKGIPASVRPKAWLYLCGGQLLLEKHPNEYEELLQAPGDPKCMEDIRKDLHRQFPYHE 537
R RKGIP +R W + G + LL +P Y +L+ + DI +D+ R FP H
Sbjct: 81 RIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYVQLVIYETSASEL-DIIRDISRTFPSHV 139
Query: 538 MFIREEGLGQQELFSVLKAYSVLNPKVGYFKHKPPVAAFL 657
F + G GQ+ L++VLKAYSV + VGY + +A L
Sbjct: 140 FFQKRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLL 179
>At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein
similar to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 400
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/101 (35%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Frame = +1
Query: 364 RKGIPASVRPKAWLYLCGGQLLLEKHPNE-YEELLQAPGD--PKCMEDIRKDLHRQFPYH 534
RKGIP +RPK W L G P Y +L +A I DL R FP H
Sbjct: 114 RKGIPPVLRPKVWFSLSGAAKKKSTVPESYYSDLTKAVEGMVTPATRQIDHDLPRTFPGH 173
Query: 535 EMFIREEGLGQQELFSVLKAYSVLNPKVGYFKHKPPVAAFL 657
E G L VL YS + VGY + VAA L
Sbjct: 174 PWLDTPE--GHAALRRVLVGYSFRDSDVGYCQGLNYVAALL 212
>At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein low
similarity to Rab6 GTPase activating protein, GAPCenA
[Homo sapiens] GI:12188746; contains Pfam profile
PF00566: TBC domain
Length = 882
Score = 38.3 bits (85), Expect = 0.005
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Frame = +1
Query: 340 YKKVRERCRKGIPASVRPKAWLYLCGGQLLLEKHPNEYEELL---------QAPGDPKCM 492
Y+++ R G+P +R + W G + + Y++LL + K
Sbjct: 307 YEELEVLVRLGVPKDLRGEVWQAFVG--VKARRVERYYQDLLAQITNSDENSSDVQRKWK 364
Query: 493 EDIRKDLHRQFPYHEMFIREEGLGQQELFSVLKAYSVLNPKVGYFKHKPPVAAFLSCTCP 672
+ I KD+ R FP H + E G + L +L AY+ NP VGY + A L P
Sbjct: 365 KQIEKDIPRTFPGHPA-LNENG--RDSLRRILLAYACHNPSVGYCQAMNFFAGLLLLLMP 421
Query: 673 AVQAF 687
AF
Sbjct: 422 EENAF 426
>At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein low
similarity to SP|Q9BXI6 EBP50-PDZ interactor of 64 kDa
(EPI64 protein) {Homo sapiens}; contains Pfam profile
PF00566: TBC domain
Length = 777
Score = 34.3 bits (75), Expect = 0.081
Identities = 24/63 (38%), Positives = 29/63 (46%)
Frame = +1
Query: 499 IRKDLHRQFPYHEMFIREEGLGQQELFSVLKAYSVLNPKVGYFKHKPPVAAFLSCTCPAV 678
I KDL R FP H + G+ L +L AY+ NP VGY + AA L P
Sbjct: 310 IEKDLPRTFPGHPALDDD---GRNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEE 366
Query: 679 QAF 687
AF
Sbjct: 367 NAF 369
>At1g74720.1 68414.m08658 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1081
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 71 DHHAQNTPTTPPPPSCGRTNNY 6
D+H Q P+ PPPPS G + Y
Sbjct: 254 DNHPQRPPSPPPPPSAGEVHYY 275
>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
contains Pfam profile PF00566: TBC domain
Length = 771
Score = 30.7 bits (66), Expect = 1.00
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = +1
Query: 499 IRKDLHRQFPYHEMFIREEGLGQQELFSVLKAYSVLNPKVGYFKHKPPVAAFLSCTCPAV 678
I KDL R FP H + + L +L AY+ NP VGY + AA L P
Sbjct: 297 IEKDLPRTFPGHPALDDDF---RNALRRLLTAYARHNPSVGYCQAMNFFAALLLLLMPEE 353
Query: 679 QAF 687
AF
Sbjct: 354 NAF 356
>At3g59530.2 68416.m06644 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 403
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +1
Query: 283 REQKWLRMLDNWEAFMSKNYKKVRERCRKGIPASVRPKAWLY--LCGGQLLLEKH 441
R +W+ WE F K E C +G+ ++ K W + LCG L L H
Sbjct: 105 RVVRWMGEAIGWETFSVVTSKWSEEACVRGVDSTTN-KQWKHEKLCGRPLGLRFH 158
>At3g59530.1 68416.m06643 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 403
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +1
Query: 283 REQKWLRMLDNWEAFMSKNYKKVRERCRKGIPASVRPKAWLY--LCGGQLLLEKH 441
R +W+ WE F K E C +G+ ++ K W + LCG L L H
Sbjct: 105 RVVRWMGEAIGWETFSVVTSKWSEEACVRGVDSTTN-KQWKHEKLCGRPLGLRFH 158
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 74 IDHHAQNTPTTPPPPSCGRTNNY 6
+ HH QN P PP GR N Y
Sbjct: 519 LHHHHQNHSYEPAPPRHGRANRY 541
>At5g44316.1 68418.m05426 ATP-binding-cassette transporter, putative
similar to ATP-binding-cassette transporter (ABC1)
described in PMID:11156608
Length = 470
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +2
Query: 83 NTEEVRKNNKMSLQKSVKIFCSI-VASRRIP---HQYVHR*LPN 202
N+E + NK L+KS IFCSI A R+ P +Y+ R +P+
Sbjct: 194 NSESIAITNKEPLEKSGVIFCSISEAIRKYPDLIKKYLGRVVPS 237
>At1g73400.1 68414.m08498 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 466
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 301 EAISVLSSISYSARQFF*VLDCIGHLRKN 215
E I +LSS Y +QF V+D + ++++N
Sbjct: 62 EMIDILSSTKYKNKQFRIVIDMLDYMKRN 90
>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
protein similar to mavicyanin SP:P80728 from [Cucurbita
pepo]
Length = 310
Score = 23.4 bits (48), Expect(2) = 8.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 56 NTPTTPPPPS 27
NTP PPPPS
Sbjct: 153 NTPPPPPPPS 162
Score = 22.6 bits (46), Expect(2) = 8.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -3
Query: 65 HAQNTPTTPPPP 30
H + P TPPPP
Sbjct: 147 HEPSRPNTPPPP 158
>At4g32190.1 68417.m04581 centromeric protein-related low similarity
to SP|Q02224 Centromeric protein E (CENP-E protein)
{Homo sapiens}
Length = 783
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 490 MEDIRKDLHRQFPYHEMFIREEGLGQQELFSVLKAYSV 603
+ED+R++L ++ P E+ + + + Q EL+ A+ V
Sbjct: 415 LEDLREELQKEKPLLELAMHDISVIQDELYKKANAFQV 452
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,169,654
Number of Sequences: 28952
Number of extensions: 342264
Number of successful extensions: 1167
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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