Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0711
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    27   2.6  
SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   8.0  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 315 HGTHY*TKV-Q*MNHSNNVKYSKKQATYFSKAISNVFENFT 196
           HG HY   V   +  + N   +KK+  Y + AI+  F NF+
Sbjct: 145 HGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSNFS 185


>SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 89

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 705 STSYNRCILNIEIITFTSPSTDSILSPDSYGN*IE 601
           STSYN CI N++   F     + I++ + +G  IE
Sbjct: 52  STSYNGCIENLD-CKFRKSFIEEIIAYEGFGKYIE 85


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 49  IFIVYLDFMPRIYYSLCQLIPDNAYSLKDILKGCKCVV 162
           +F +Y+       +S+C ++P NA   +D+LK  + ++
Sbjct: 241 VFTIYILTRGGDVFSVCPVMPANAMIPQDVLKQIRLIL 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,206
Number of Sequences: 5004
Number of extensions: 59220
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)