Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0711
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22030.1 68416.m02779 receptor-like protein kinase-related co...    28   5.3  
At5g37630.1 68418.m04532 chromosome condensation family protein ...    27   9.2  

>At3g22030.1 68416.m02779 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function; weak similarity to receptor-like protein
           kinase homolog RK20-1 (GI:4530126) [Phaseolus vulgaris]
          Length = 253

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -3

Query: 676 H*DNNIYVPIN*FNFVTGQ-LWKLN*ITTNYRVLYLNILF--VNELRALSQTYMKFVK*S 506
           H  NN+   +N FN  T + L+KL        V  +N L+    E+R   QT    V+ +
Sbjct: 148 HNPNNVRGNVNSFNKKTTEFLYKLIGKADRLDVDGINFLYYAAGEMRLGKQTLFAMVQCA 207

Query: 505 KNISSCK 485
           K+I SCK
Sbjct: 208 KDILSCK 214


>At5g37630.1 68418.m04532 chromosome condensation family protein
            contains pfam profile: PF04154 chromosome condensation
            protein 3, C-terminal region
          Length = 1051

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 79   RIYYSLCQLIPDNAYSLKDILKGCKCVVMHLS*ED*AVESKIFKYIANCFRKISGL 246
            ++   L  L+ D+  S KD+LK  K V+ HL   D     ++ +  AN   +I G+
Sbjct: 897  KLLKKLLSLLADSVRSEKDLLKEVKPVLQHLKSLDACPSEELTQDQANSIFEILGV 952


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,942,124
Number of Sequences: 28952
Number of extensions: 272749
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)