Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0710
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    27   4.1  
12_02_0211 + 15694061-15694457,15694497-15695452                       27   5.5  

>07_03_1512 +
           27288779-27289222,27298101-27298399,27298499-27298589,
           27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 90  PLRESHGNLSSINFRYGRPGHH 25
           P+R+  G+   + F YG PGH+
Sbjct: 604 PVRKEQGSKPGVCFNYGDPGHY 625


>12_02_0211 + 15694061-15694457,15694497-15695452
          Length = 450

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 90  PLRESHGNLSSINFRYGRPGHH 25
           P+R+  G+ S + F +G PGH+
Sbjct: 179 PIRKEQGSKSWVCFNFGDPGHY 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,194,959
Number of Sequences: 37544
Number of extensions: 129130
Number of successful extensions: 175
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)