Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0710
         (397 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21581| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.2  
SB_47779| Best HMM Match : MATH (HMM E-Value=3.8)                      27   5.5  
SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)                 27   7.3  

>SB_21581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 76  RFTKWRQRIVTLKFHKRAPNTYFSRLHYIYSVRLFF 183
           R TKW+ +++T   H R     FS+   I  VRL F
Sbjct: 5   RITKWQFQLMTRVHHSRTSFIVFSQFQLITRVRLSF 40


>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 396 GFTKKK---KNIYITSTLH*RYFKTLTKKKKNTSF 301
           GF KK     NI++  TL  +Y K+  KK+KN  F
Sbjct: 797 GFRKKNGTTDNIFVLKTLIDKYVKSKPKKRKNLLF 831


>SB_47779| Best HMM Match : MATH (HMM E-Value=3.8)
          Length = 188

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 84 RESHGNLSSINFRYG 40
          RESHGNLS+++F  G
Sbjct: 11 RESHGNLSNLSFEVG 25


>SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)
          Length = 338

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 396 GFTKKK---KNIYITSTLH*RYFKTLTKKKKNTSF 301
           GF KK     NI++  TL  +Y K   KK+KN  F
Sbjct: 11  GFRKKNGTTDNIFVLKTLIDKYVKGKPKKRKNLLF 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,252,423
Number of Sequences: 59808
Number of extensions: 172843
Number of successful extensions: 244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)