Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0710
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   3.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   3.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   3.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   3.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   9.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 87   VAPKNCYFKIPQ 122
            V PKNC F+ P+
Sbjct: 1610 VGPKNCLFRKPE 1621


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 339 FKTLTKKKKNTS 304
           FKTLT++ KNT+
Sbjct: 138 FKTLTQEPKNTN 149


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 99  SLAPLRESHGNLSSINFRYGR--PGHHNMSQNR 7
           S+ P  ESH N  ++ F Y R  P H  + + R
Sbjct: 625 SVVPSDESHWNDLAMEFYYNRSIPDHKRIVKLR 657


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 99  SLAPLRESHGNLSSINFRYGR--PGHHNMSQNR 7
           S+ P  ESH N  ++ F Y R  P H  + + R
Sbjct: 663 SVVPSDESHWNDLAMEFYYNRSIPDHKRIVKLR 695


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 152 SLLKYVLGARLWNFKVTILWRHFVNRME 69
           ++L  VLG R W F V        N+ME
Sbjct: 373 AVLAGVLGQRQWQFDVYSKDVELANKME 400


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 100 IVTLKFHKRAPNTY 141
           ++ L FH R P+ Y
Sbjct: 344 VLVLNFHHRTPDRY 357


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 100 IVTLKFHKRAPNTY 141
           ++ L FH R P+ Y
Sbjct: 344 VLVLNFHHRTPDRY 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,258
Number of Sequences: 438
Number of extensions: 1827
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)