Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0709
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 254 6e-69
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 82 8e-17
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 82 8e-17
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 81 2e-16
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 70 3e-13
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 45 1e-05
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 44 2e-05
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 42 8e-05
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 31 0.19
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 30 0.25
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 29 0.43
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 29 0.57
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 29 0.75
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 29 0.75
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 28 1.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 28 1.3
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 27 1.7
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.7
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.3
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 2.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.3
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 27 2.3
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 27 3.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 3.0
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 3.0
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 5.3
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 5.3
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.3
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 25 7.0
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 7.0
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 25 7.0
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 9.3
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 254 bits (623), Expect = 6e-69
Identities = 123/207 (59%), Positives = 159/207 (76%), Gaps = 1/207 (0%)
Frame = +3
Query: 21 DGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVN 200
+G + + +E+L DE+ SRTRLL+N+IK+MKSE R++HE +KIKEN EKI N
Sbjct: 22 EGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNN 81
Query: 201 KTLPYLVSNVIELLDVDPQEEE-EDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDA 377
K LPYLV NV+E+LD+ P E + ++ A + ++ R GK AVIKTSTRQT FLP+IGLV+
Sbjct: 82 KMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEP 141
Query: 378 EKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGXLDKQIQELIEAV 557
E+L PGDL+GVNKDSYLI++ LP+EYD+RVKAMEVDE+PTE+YSDIG L KQI+EL EA+
Sbjct: 142 EELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAI 201
Query: 558 VLPMTHKEKFVNLGLPPTPKEFFLFGP 638
VLPM +KF LG+ P PK +FGP
Sbjct: 202 VLPMQQADKFRKLGVKP-PKGCLMFGP 227
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 81.8 bits (193), Expect = 8e-17
Identities = 38/108 (35%), Positives = 64/108 (59%)
Frame = +3
Query: 315 AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERP 494
A++ ++T Y + ++ +D E LKP V + + S +++ LP E D+ + + DERP
Sbjct: 70 AIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERP 129
Query: 495 TEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
Y+D+G LD Q QE+ EAV LP+T + + +G+ P P+ L+GP
Sbjct: 130 DVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDP-PRGVLLYGP 176
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 81.8 bits (193), Expect = 8e-17
Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 1/184 (0%)
Frame = +3
Query: 90 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 269
L N ++ ++ V + ++Q I + T+ ++ + ++ + LL + Q +E
Sbjct: 5 LKTNVLQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQE 64
Query: 270 DGAVVDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLP 446
G+ V + GK V +K Y + + +D +++KP V + DSY +++ LP
Sbjct: 65 PGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILP 124
Query: 447 AEYDARVKAMEVDERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFF 626
+ D V M V++ P Y +G L+KQI+E+ E + LP+ H E F +LG+ P PK
Sbjct: 125 NKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGI-PQPKGIL 183
Query: 627 LFGP 638
L+GP
Sbjct: 184 LYGP 187
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 80.6 bits (190), Expect = 2e-16
Identities = 40/107 (37%), Positives = 67/107 (62%)
Frame = +3
Query: 315 AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERP 494
A++ T+ + Y++ ++ VD + L+PG V ++ + I+ L + D + M++D+ P
Sbjct: 128 AIVSTAGPE-YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAP 186
Query: 495 TEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFG 635
TE Y+DIG L+ QIQE+ EAV LP+TH E + +G+ P PK L+G
Sbjct: 187 TESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKP-PKGVILYG 232
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 69.7 bits (163), Expect = 3e-13
Identities = 35/90 (38%), Positives = 51/90 (56%)
Frame = +3
Query: 369 VDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGXLDKQIQELI 548
V ++ G VG +++ Y I LP + D V M+V+E+P Y D+G +QI+ L
Sbjct: 133 VSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLR 192
Query: 549 EAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
E V LP+ E+FV LG+ P PK L+GP
Sbjct: 193 EVVELPLLSPERFVKLGIDP-PKGIMLYGP 221
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +3
Query: 486 ERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
E P +SDIG ++ Q+L E+V P+TH E F LG+ P PK L+GP
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRP-PKGVLLYGP 590
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 43.6 bits (98), Expect = 2e-05
Identities = 30/90 (33%), Positives = 49/90 (54%)
Frame = +3
Query: 369 VDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGXLDKQIQELI 548
+DAE L D +GV D++ L + + ++ V E P ++ DIG L++ +EL
Sbjct: 457 IDAEVL---DSLGVTMDNFRF--ALGSSNPSALRETVV-EVPNVRWEDIGGLEEVKRELR 510
Query: 549 EAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
E V +P+ + EKF+ G+ P+ K FGP
Sbjct: 511 ETVQMPVMYAEKFLRFGVTPS-KGVLFFGP 539
Score = 40.7 bits (91), Expect = 2e-04
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Frame = +3
Query: 300 RKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAM- 476
RKG V++ S RQ F +VD + P + V++D+ + E P + ++
Sbjct: 167 RKGDLFVVRGSMRQVEFK----VVD---VAPDEFGIVSQDTIIHWEGEPINREDEESSLA 219
Query: 477 EVDERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
EV Y DIG +Q+ ++ E V LP+ H + F ++G+ P P+ ++GP
Sbjct: 220 EVG------YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKP-PRGILMYGP 266
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 41.9 bits (94), Expect = 8e-05
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 462 RVKAMEVDERPTE-QYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
R KA E P++ SDIG LD I EL+E V +P+ H E + G+ P P+ L GP
Sbjct: 158 RQKAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHP-PRGVLLHGP 216
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/71 (22%), Positives = 37/71 (52%)
Frame = +3
Query: 33 ALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLP 212
ALS+ + +PT+ +LL ++M ++ +++ D + E +K +++ LP
Sbjct: 406 ALSQIAVEIPTEVSKHHAQLLPLVFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLP 465
Query: 213 YLVSNVIELLD 245
L+ ++ LL+
Sbjct: 466 MLMERLVGLLE 476
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 30.3 bits (65), Expect = 0.25
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 96 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDG 275
DNE K MK E + + Q + ++ + ++K+K K ++ + EEEED
Sbjct: 89 DNEAKKMKREKEILRQQRQKRKSELTQLSQKVK-EKFKKMRKKPARRIVTIANDEEEEDD 147
Query: 276 AVVDLDS-QRKGKCAVIK 326
+D D+ +RK +K
Sbjct: 148 QTMDEDAFERKSMQGELK 165
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 29.5 bits (63), Expect = 0.43
Identities = 26/117 (22%), Positives = 50/117 (42%)
Frame = +3
Query: 33 ALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLP 212
+L EEV R PTD+ + D + + K+E + I Q ++IK + LP
Sbjct: 715 SLPEEVSRQPTDDKGEQVSNADVDSGLSKTERLTIQ-----QTNEIKHVPTNTTSSVKLP 769
Query: 213 YLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 383
SN E + + + ++ L+SQ + +++ + +G+ + EK
Sbjct: 770 QQPSNEDEKERITTADYADSTSLERLESQEPNRNELVQVGSSNAGNTTSVGMNEHEK 826
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 29.1 bits (62), Expect = 0.57
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 329 FNPANIFLARHRLGRCRETQTRRLGRSQQRLLFDLRNAP 445
F+ +FL R CR+ RR +++Q LL++ R+AP
Sbjct: 298 FHKLRLFLMERRYYYCRQRSVRRKEKTRQLLLYE-RSAP 335
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 28.7 bits (61), Expect = 0.75
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +3
Query: 3 DKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENT 182
DK+ E E +S + + E +++ + NE+K+ K + + ++ N KE+T
Sbjct: 825 DKNQIETLNERISAAADELSSMESINKNQA--NELKLAKQKCSNLQEKINFGNKLAKEHT 882
Query: 183 EKI 191
EKI
Sbjct: 883 EKI 885
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 28.7 bits (61), Expect = 0.75
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 504 YSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
+SDI LD L EAV+ P E F GL + LFGP
Sbjct: 378 WSDIAGLDDAKNSLKEAVIYPFLRPELF--QGLREPVQGMLLFGP 420
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 12 IWEDGEEALSEEVLRMPTDEIVSRTRLLDN 101
++ DGE+ L E+ ++PT+ I S T DN
Sbjct: 324 LFVDGEKGLRSELSQIPTENIDSTTDRFDN 353
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +3
Query: 90 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 269
L+D +IM++E R + ++ + I + + N +LP+ I+L+D + E
Sbjct: 1114 LIDGHSEIMENERRRPKYRIRLSGNPILGDGKSDNQNMSLPFYRGEYIQLIDANQDNYLE 1173
Query: 270 D 272
+
Sbjct: 1174 E 1174
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -2
Query: 413 VDSY--QVSWFEFLCIYQADDG 354
VD+Y SW+E LC Y A+DG
Sbjct: 75 VDNYILSYSWYERLCSYLAEDG 96
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.7
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 3 DKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENT 182
DKS ++ E+ L + R+ ++ V +R+ + K SE+ LQ QN+ K++
Sbjct: 139 DKSFRKNMEDEL--RITRLASENNVLISRI--DRTKRHFSELFTQKQMLQLQNENFKDDY 194
Query: 183 EKIK-VNKTL 209
EKIK NK L
Sbjct: 195 EKIKEENKRL 204
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 265 KKTAPLSI*THSVKGNAL*SRLQPGKHISCPSSAW 369
+K AP + TH K N+L S +P S S +W
Sbjct: 352 RKLAPPFLRTHKAKSNSLFSMKRPSSSSSSLSGSW 386
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +3
Query: 96 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELL---DVDPQEEE 266
DN++ +++ +M + + N+K+ E + +KTL ++ S ++ L DV EE
Sbjct: 700 DNDMASLEAPMMSHNTDTDTLNNKLNEKDNVVFEDKTLQHVASEIVPNLPPADVGELNEE 759
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 108 KIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVI 233
+++ +E+ R+S L Q ++ +TEK ++N L SNV+
Sbjct: 1128 EMLNAELQRVSQSLPPQMSRVVHDTEK-RLNMLFDRLNSNVL 1168
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 474 MEVDERPTEQYSDIGXLDKQIQELIEAV 557
M V+ PT ++S +G K IQE+IEA+
Sbjct: 198 MGVESVPTCRHSKLGEPSKTIQEVIEAL 225
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -1
Query: 567 LATLQLQLIPVSVYPDXQYLSIVQLVSHLPPLPL---LWRH 454
L + L +P++ + Q S + +SHLP +PL LW H
Sbjct: 642 LCEICLADVPLTFFEHQQKNSYLDAISHLPFIPLNSCLWLH 682
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 3.0
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 60 PTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIEL 239
P+ EI S+ DNE ++ + + IS+E +ND +E E N+ S+
Sbjct: 61 PSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTTEE-AETSSGNEAADDEDSSSDAQ 119
Query: 240 LDVDPQEEEEDG-AVVDLDSQRK 305
V E DG + +LD +RK
Sbjct: 120 SSVPSFSEIHDGMSEEELDKERK 142
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 240 LDVDPQEEEEDGAVVDLDSQRKGKCAVIKTST 335
++VD +EEED V D D VI ST
Sbjct: 250 VEVDDDDEEEDEVVTDDDGTSNADSEVITAST 281
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/61 (18%), Positives = 29/61 (47%)
Frame = +3
Query: 90 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 269
L+D IM++ R + ++ + I + + N ++PY+ ++++D + E
Sbjct: 932 LIDGHCPIMENGKRRPKYRIRLSGNPILGDGKSDNQNMSIPYIRGEYVQMIDANQDNYLE 991
Query: 270 D 272
+
Sbjct: 992 E 992
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 486 ERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
E+P ++ DI L+ + L E V+LP+ + F + G P L+GP
Sbjct: 122 EKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPW-SGILLYGP 170
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/65 (21%), Positives = 34/65 (52%)
Frame = +3
Query: 99 NEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGA 278
N + + ++ + ++Q + I +EK++ + + S + E L+++ QEE+ +
Sbjct: 196 NGLSVKLPNILTMDEQIQRLKEAIA--SEKLQQEERSQIIKSLMEEELEINEQEEKIKHS 253
Query: 279 VVDLD 293
+DLD
Sbjct: 254 FIDLD 258
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -2
Query: 119 LHYFDFIVQKSGSTYDFISWHAK---NFLTESFLAILPN*LV 3
L + D ++K G+T FI WH N S +I+ N ++
Sbjct: 39 LRHVDIEMKKQGNTIKFIVWHGSRKHNACIRSVYSIINNMII 80
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 21 DGEEALSEEVLRMPTDEI--VSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIK 194
D + L +L+ +DE+ ++ T L+DN ++ ++ +S + + I E++
Sbjct: 307 DSKGNLDVSLLKSLSDEVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMA 366
Query: 195 VNKTLPYL 218
++ PY+
Sbjct: 367 YDEENPYV 374
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 15 WEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQN 161
W++G + +E++ D +V + + + +KSEV ++ E+ QN
Sbjct: 141 WKNGLDKNNEKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQN 189
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 528 KQIQELIEAVVLPMTHKEKFVNLGLPP 608
K++ L++ ++L T E+ +LGLPP
Sbjct: 605 KKVHSLLKHIMLRRTKLERADDLGLPP 631
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,149
Number of Sequences: 5004
Number of extensions: 49304
Number of successful extensions: 212
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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