Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0709
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 285 2e-77
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 280 6e-76
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 87 1e-17
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 87 1e-17
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 82 3e-16
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 82 4e-16
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 77 1e-14
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 75 3e-14
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 75 4e-14
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 46 2e-05
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 45 4e-05
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 44 7e-05
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 38 0.007
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 36 0.017
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 36 0.030
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 34 0.092
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 33 0.21
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 33 0.21
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 32 0.28
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 32 0.28
At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast... 32 0.37
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono... 32 0.37
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 32 0.37
At5g27500.1 68418.m03287 hypothetical protein hypothetical prote... 31 0.49
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 31 0.49
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 31 0.49
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 31 0.65
At5g25590.1 68418.m03045 expressed protein contains Pfam profile... 31 0.86
At5g19550.1 68418.m02328 aspartate aminotransferase, cytoplasmic... 30 1.1
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 30 1.1
At5g46410.1 68418.m05712 NLI interacting factor (NIF) family pro... 30 1.5
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 30 1.5
At2g44180.1 68415.m05496 methionyl aminopeptidase, putative / me... 30 1.5
At2g30500.1 68415.m03715 kinase interacting family protein simil... 30 1.5
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 30 1.5
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 29 2.0
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 29 2.0
At5g07220.1 68418.m00823 BAG domain-containing protein contains ... 29 2.6
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 29 2.6
At5g58320.2 68418.m07301 kinase interacting protein-related low ... 29 3.5
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar... 29 3.5
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 29 3.5
At2g43990.1 68415.m05470 expressed protein 28 4.6
At2g26570.1 68415.m03187 expressed protein contains Pfam profile... 28 4.6
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 28 4.6
At1g28020.1 68414.m03431 pentatricopeptide (PPR) repeat-containi... 28 4.6
At5g06850.1 68418.m00774 C2 domain-containing protein contains I... 28 6.1
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 28 6.1
At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3) iden... 27 8.0
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 27 8.0
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 27 8.0
At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to ... 27 8.0
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 285 bits (699), Expect = 2e-77
Identities = 133/208 (63%), Positives = 169/208 (81%), Gaps = 1/208 (0%)
Frame = +3
Query: 18 EDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKV 197
ED +++ M T++I TRLLDNEI+I+K + R + E + +KIKEN EKIK+
Sbjct: 7 EDTSSFEEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKL 66
Query: 198 NKTLPYLVSNVIELLDVDPQEE-EEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVD 374
NK LPYLV N++E+L+++P+++ EEDGA +DLDSQRKGKC V+KTSTRQT FLPV+GLVD
Sbjct: 67 NKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVD 126
Query: 375 AEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGXLDKQIQELIEA 554
+ LKPGDLVGVNKDSYLIL+TLP+EYD+RVKAMEVDE+PTE Y+DIG L+KQIQEL+EA
Sbjct: 127 PDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEA 186
Query: 555 VVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
+VLPMTHKE+F LG+ P PK L+GP
Sbjct: 187 IVLPMTHKERFEKLGVRP-PKGVLLYGP 213
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 280 bits (686), Expect = 6e-76
Identities = 131/200 (65%), Positives = 167/200 (83%), Gaps = 1/200 (0%)
Frame = +3
Query: 42 EEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLV 221
+++ M TD+I +RLL NEI+I+K E R + +L++ +KIKEN EKIK+NK LPYLV
Sbjct: 14 DQLASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPYLV 73
Query: 222 SNVIELLDVDPQEE-EEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGD 398
N++E+L++ P+++ EEDGA +DLDSQRKGKC V+KTSTRQT FLPV+GLVD + LKPGD
Sbjct: 74 GNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGD 133
Query: 399 LVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGXLDKQIQELIEAVVLPMTHK 578
LVGVNKDSYLIL+TLP+EYD+RVKAMEVDE+PTE Y+DIG L+KQIQEL+EA+VLPMTHK
Sbjct: 134 LVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK 193
Query: 579 EKFVNLGLPPTPKEFFLFGP 638
E+F LG+ P PK L+GP
Sbjct: 194 EQFEKLGIRP-PKGVLLYGP 212
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 86.6 bits (205), Expect = 1e-17
Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 6/204 (2%)
Frame = +3
Query: 42 EEVLRMPT--DEIVSRTRLLDNE-IK---IMKSEVMRISHELQAQNDKIKENTEKIKVNK 203
E R+PT + RLL E IK +M+ E + L+ Q +K +E+ K+ +
Sbjct: 47 EAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLR 106
Query: 204 TLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 383
P V N+ EL+D + A++ +S Y++ ++ VD ++
Sbjct: 107 GTPMSVGNLEELIDENH--------------------AIVSSSVGPEYYVGILSFVDKDQ 146
Query: 384 LKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGXLDKQIQELIEAVVL 563
L+PG + ++ ++ L E D V M+V++ P E Y+DIG L+ QIQE+ EAV L
Sbjct: 147 LEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVEL 206
Query: 564 PMTHKEKFVNLGLPPTPKEFFLFG 635
P+TH E + ++G+ P PK L+G
Sbjct: 207 PLTHPELYEDIGIKP-PKGVILYG 229
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 86.6 bits (205), Expect = 1e-17
Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 6/204 (2%)
Frame = +3
Query: 42 EEVLRMPT--DEIVSRTRLLDNE-IK---IMKSEVMRISHELQAQNDKIKENTEKIKVNK 203
E R+PT + RLL E IK +M+ E + L+ Q +K +E+ K+ +
Sbjct: 47 EAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLR 106
Query: 204 TLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 383
P V N+ EL+D + A++ +S Y++ ++ VD ++
Sbjct: 107 GTPMSVGNLEELIDENH--------------------AIVSSSVGPEYYVGILSFVDKDQ 146
Query: 384 LKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGXLDKQIQELIEAVVL 563
L+PG + ++ ++ L E D V M+V++ P E Y+DIG L+ QIQE+ EAV L
Sbjct: 147 LEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVEL 206
Query: 564 PMTHKEKFVNLGLPPTPKEFFLFG 635
P+TH E + ++G+ P PK L+G
Sbjct: 207 PLTHPELYEDIGIKP-PKGVILYG 229
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/122 (31%), Positives = 70/122 (57%)
Frame = +3
Query: 273 GAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAE 452
G +++ Q G ++ ++T Y++ ++ ++ E LKP V +++ S +++ LP E
Sbjct: 80 GQFMEMVDQNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPE 136
Query: 453 YDARVKAMEVDERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLF 632
D+ + + E+P Y+DIG D Q QE+ EAV LP+TH E + +G+ P P+ L+
Sbjct: 137 ADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDP-PRGVLLY 195
Query: 633 GP 638
GP
Sbjct: 196 GP 197
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 81.8 bits (193), Expect = 4e-16
Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Frame = +3
Query: 114 MKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLD 293
+K ++ HELQ Q + N +++ + +++ + +L + Q +E G+ V
Sbjct: 32 LKQYYLQHIHELQRQLRQKTNNLNRLEAQRNE---LNSRVRMLREELQLLQEPGSYVGEV 88
Query: 294 SQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVK 470
+ GK V +K Y + + +D K+ P V + DSY++ LP++ D V
Sbjct: 89 VKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVN 148
Query: 471 AMEVDERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
M+V++ P Y IG LD+QI+E+ E + LP+ H E F +LG+ PK L+GP
Sbjct: 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGI-AQPKGVLLYGP 203
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 77.0 bits (181), Expect = 1e-14
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Frame = +3
Query: 231 IELLDVDPQEEEEDGAVVDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVG 407
+ +L + Q +E G+ V + GK V +K Y + + +D KL P V
Sbjct: 68 VRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVA 127
Query: 408 VNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKF 587
+ DSY++ LP++ D V M+V++ P Y IG LD+QI+E+ E + LP+ H E F
Sbjct: 128 LRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELF 187
Query: 588 VNLGLPPTPKEFFLFGP 638
+LG+ PK L+GP
Sbjct: 188 ESLGI-AQPKGVLLYGP 203
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 75.4 bits (177), Expect = 3e-14
Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Frame = +3
Query: 357 VIGLVDAEK---LKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGXLD 527
V+GL D ++ G VGV++ Y I LP + D V M V+E+P YSDIG
Sbjct: 152 VVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCK 211
Query: 528 KQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
+QI+++ E V LPM H EKFV LG+ P PK +GP
Sbjct: 212 EQIEKIREVVELPMLHPEKFVRLGIDP-PKGVLCYGP 247
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 74.9 bits (176), Expect = 4e-14
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Frame = +3
Query: 357 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGX 521
V+GL D K+ P D+ VGV+++ Y I LP + D V M V+E+P Y+D+G
Sbjct: 115 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGG 172
Query: 522 LDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
+QI+++ E V LPM H EKFV LG+ P PK +GP
Sbjct: 173 CKEQIEKMREVVELPMLHPEKFVKLGIDP-PKGVLCYGP 210
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 46.0 bits (104), Expect = 2e-05
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Frame = +3
Query: 279 VVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLV----GVNKDSYLILETLP 446
++ LD +G I + + YFL ++ GDL G+ + ++ET P
Sbjct: 121 ILPLDDTIEGVSGNIFDAYLKPYFLEAY-----RPVRKGDLFLVRGGMRSIEFKVIETDP 175
Query: 447 AEYDARVKAMEV----------DERPTEQ--YSDIGXLDKQIQELIEAVVLPMTHKEKFV 590
AEY E+ DE ++ Y D+G + KQ+ ++ E V LP+ H + F
Sbjct: 176 AEYCVVAPDTEIFCEGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFK 235
Query: 591 NLGLPPTPKEFFLFGP 638
++G+ P PK L+GP
Sbjct: 236 SIGVKP-PKGILLYGP 250
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +3
Query: 480 VDERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
V E P + DIG L+ +EL E V P+ H EKF G+ P+ K +GP
Sbjct: 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS-KGVLFYGP 523
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 45.2 bits (102), Expect = 4e-05
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Frame = +3
Query: 405 GVNKDSYLILETLPAEYDARVKAMEV----------DERPTEQ--YSDIGXLDKQIQELI 548
G+ + ++ET PAEY E+ DE ++ Y D+G + KQ+ ++
Sbjct: 161 GMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIR 220
Query: 549 EAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
E V LP+ H + F ++G+ P PK L+GP
Sbjct: 221 ELVELPLRHPQLFKSIGVKP-PKGILLYGP 249
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +3
Query: 480 VDERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
V E P + DIG L+ +EL E V P+ H EKF G+ P+ K +GP
Sbjct: 471 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS-KGVLFYGP 522
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 44.4 bits (100), Expect = 7e-05
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Frame = +3
Query: 405 GVNKDSYLILETLPAEYDARVKAMEV----------DERPTEQ--YSDIGXLDKQIQELI 548
G+ + ++ET PAEY E+ DE + Y D+G + KQ+ ++
Sbjct: 161 GMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIR 220
Query: 549 EAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
E V LP+ H + F ++G+ P PK L+GP
Sbjct: 221 ELVELPLRHPQLFKSIGVKP-PKGILLYGP 249
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +3
Query: 480 VDERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
V E P ++DIG L+ +EL E V P+ H EKF G+ P+ K +GP
Sbjct: 471 VVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS-KGVLFYGP 522
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 37.5 bits (83), Expect = 0.007
Identities = 27/86 (31%), Positives = 42/86 (48%)
Frame = +3
Query: 381 KLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGXLDKQIQELIEAVV 560
K KP D G KD + ++ A + + V E+P ++SD+ L+ Q L EAV+
Sbjct: 93 KTKPKDGEGGGKDGE---DPEQSKLRAGLNSAIVREKPNIKWSDVAGLESAKQALQEAVI 149
Query: 561 LPMTHKEKFVNLGLPPTPKEFFLFGP 638
LP+ + F P + F L+GP
Sbjct: 150 LPVKFPQFFTGKRRP--WRAFLLYGP 173
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 486 ERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
E P + D+G ++ +L+EAV P H++ F +G P P +FGP
Sbjct: 717 EVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRP-PSGILMFGP 766
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 35.5 bits (78), Expect = 0.030
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 99 NEIKIMKSEVMRISHELQAQNDKIKENTEKI-KVNKTLPYLVSNVIELLDVDPQEEEEDG 275
NE++I+K E + EL+ + DK+ E + K K L LV + + ++D E+E G
Sbjct: 267 NEMEIVKIEQKGVIEELERKLDKLNETVRSLTKEEKVLRDLVIGLEK--NLDESMEKESG 324
Query: 276 AVVDLDSQRKGKCAVIKTS 332
+V++D+ GK IK S
Sbjct: 325 MMVEIDA--LGKERTIKES 341
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +3
Query: 3 DKSIWEDGE--EALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKE 176
DK++ E+ E L EVL+ ++++V++T ++KI + + ++L++Q++ +K
Sbjct: 445 DKALDEEKRNGEDLKAEVLK--SEKMVAKTLEELEKVKIERKSLFSAKNDLESQSESLK- 501
Query: 177 NTEKIKVNKTL 209
+E +K+ K L
Sbjct: 502 -SENVKLEKEL 511
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 33.9 bits (74), Expect = 0.092
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Frame = +3
Query: 6 KSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHEL-QAQNDKIKENT 182
++I +GEEAL E+ DE + T L + + S + +S L Q ++D + EN
Sbjct: 775 ETICGEGEEALKEDKSPTVVDEALEDTALPEANLSDPSSPTVVVSKVLTQLKDDILAENV 834
Query: 183 EKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTY 347
KI +P V+ L D EE+ V + I STR+ Y
Sbjct: 835 SKIPEKVAVP---EEVLTQLKDDVLEEKVSEKVAIPEEVSILSRVPINISTRRAY 886
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 501 QYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
++ DIG L+ + L E V+LPM E F L K LFGP
Sbjct: 148 KFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGP 193
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 501 QYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
++ DIG L+ + L E V+LPM E F L K LFGP
Sbjct: 349 KFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGP 394
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 450 EYDARVKAMEVD-ERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFF 626
E++ R++ + E + DIG LD+ + L E V+LP+ + F GL +
Sbjct: 501 EFEKRIRPEVIPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGIL 559
Query: 627 LFGP 638
LFGP
Sbjct: 560 LFGP 563
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 450 EYDARVKAMEVD-ERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFF 626
E++ R++ + E + DIG LD+ + L E V+LP+ + F GL +
Sbjct: 496 EFEKRIRPEVIPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGIL 554
Query: 627 LFGP 638
LFGP
Sbjct: 555 LFGP 558
>At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast /
transaminase A (ASP3) (YLS4) identical to SP|P46644
Aspartate aminotransferase, chloroplast precursor (EC
2.6.1.1) (Transaminase A) {Arabidopsis thaliana};
identical to cDNA YLS4 mRNA for aspartate
aminotransferase (ASP3), partial cds GI:13122285
Length = 449
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 267 EDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVN 413
E+G + L+ RK + +I TR +LP++GLV+ KL ++G +
Sbjct: 86 EEGKPLVLNVVRKAEQQLINDRTRIKEYLPIVGLVEFNKLSAKLILGAD 134
>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
splice site at exon 6
Length = 612
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/92 (22%), Positives = 45/92 (48%)
Frame = +3
Query: 27 EEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKT 206
++ ++ +R E + + + ++K+M + + + E QA + +I E +EK+K K
Sbjct: 218 DKVIANAAMRAKIKESMGQKDDIQGQVKLMGAGLDGVKKERQAISARINELSEKLKATKD 277
Query: 207 LPYLVSNVIELLDVDPQEEEEDGAVVDLDSQR 302
++ N EL V + ++ + DL QR
Sbjct: 278 EITVLEN--ELKTVSEKRDKAYSNIHDLRRQR 307
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 504 YSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
+SDIG L+ L E V+LP+ E F L K LFGP
Sbjct: 949 FSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGP 993
>At5g27500.1 68418.m03287 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 187
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 3 DKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENT 182
D S W++ ++ + + V ++++ ++ NEI +SEV I +EL A ++KE+
Sbjct: 47 DPSSWKNKKDWVEDAVYE-EVEDVLPNLGIMANEIVKARSEVNEIVNELSASIQELKEDA 105
Query: 183 --EKIKVNK 203
K+++ K
Sbjct: 106 MCSKMEIRK 114
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 504 YSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
+ DIG L+K L E V+LP+ E F L K LFGP
Sbjct: 819 FDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGP 863
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 31.5 bits (68), Expect = 0.49
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +3
Query: 396 DLVGVNKDSYLILETLPAEYDARVKAMEVDERPTE---QYSDIGXLDKQIQELIEAVVLP 566
D+ NK L+ + E + K + P++ + DIG L+ + L E V+LP
Sbjct: 923 DIQNENKSLKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFDDIGALENVKETLKELVMLP 982
Query: 567 MTHKEKFVNLGLPPTPKEFFLFGP 638
+ E F L K LFGP
Sbjct: 983 LQRPELFDKGQLTKPTKGILLFGP 1006
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 504 YSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
++DIG LD+ + L E V+LP+ + F GL + LFGP
Sbjct: 413 FADIGSLDETKESLQELVMLPLRRPDLFKG-GLLKPCRGILLFGP 456
>At5g25590.1 68418.m03045 expressed protein contains Pfam profile
PF04783: Protein of unknown function (DUF630)
Length = 775
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 243 DVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDA 377
D + +EEEE+ VV++ ++KGK + +ST F + A
Sbjct: 279 DEEEEEEEEEEVVVEVKKKKKGKAKIEHSSTAPPEFRRAVAKTSA 323
>At5g19550.1 68418.m02328 aspartate aminotransferase, cytoplasmic
isozyme 1 / transaminase A (ASP2) identical to SP|P46645
Aspartate aminotransferase, cytoplasmic isozyme 1 (EC
2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
Length = 405
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 267 EDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILET 440
E+G + LD RK + ++ +R ++P++G+ D KL ++G DS I E+
Sbjct: 42 EEGKPLVLDVVRKAEQQLVNDPSRVKEYIPIVGISDFNKLSAKLILGA--DSPAITES 97
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 363 GLVDAEKLKPG-DLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGXLDKQIQ 539
GL E G D+V V S L + A+ D + +E E Q S KQI
Sbjct: 634 GLPSVESYASGKDVVNVKLPSVSALTSSEADDDMDRQVLENSE--ALQASSFSISQKQIP 691
Query: 540 ELIEAVVLPMTHKEKFVNLGL 602
EL+ +LP + + +NL +
Sbjct: 692 ELVTLSLLPKSQWQSLINLDI 712
>At5g46410.1 68418.m05712 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 453
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 153 AQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQ 299
A D IK +T+KI ++ +L N +V+P + E D D Q
Sbjct: 206 ANKDDIKSDTDKINLDNHDLFLAFNRTRSYNVEPDDRAESEVAEDFDPQ 254
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +3
Query: 99 NEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGA 278
N+I IM S++ R L+A D+ K EK+ ++ + ++SN + + D +EE G
Sbjct: 577 NKIIIMISDLDRRVESLEAFKDEQKAKEEKVHIDNCV--ILSNTMITRNQDEMNQEEAGD 634
Query: 279 VVDLDSQ 299
+ D +
Sbjct: 635 SREKDQE 641
>At2g44180.1 68415.m05496 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to SP|P50579 Methionine aminopeptidase
2 (EC 3.4.11.18) (MetAP 2) {Homo sapiens}; contains Pfam
profile PF00557: metallopeptidase family M24
Length = 441
Score = 29.9 bits (64), Expect = 1.5
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Frame = +3
Query: 171 KENTEKIKVNKTLPYLVSNVIELLDV--------DPQEEEEDGAVVDLDS---QRKGKCA 317
KENTE N L S++ + LD+ D +EEEDG + + ++K K
Sbjct: 13 KENTEAESSNGNESQLSSDLTKSLDLAEVKEDEKDNNQEEEDGLKAEASTKKKKKKSKSK 72
Query: 318 VIKTSTRQT--YFLPVIGLVDAEKLKPGDLVGVNKDS 422
K+S +QT +PV+ L + G++ N D+
Sbjct: 73 KKKSSLQQTDPPSIPVLELFPSGDFPQGEIQQYNDDN 109
>At2g30500.1 68415.m03715 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 517
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = +3
Query: 18 EDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKV 197
EDG+EAL + + + ++ +LL + + + + H++ ++KE EK+++
Sbjct: 156 EDGDEALIRRMAELELELQETKQKLLLQQESVDGDNNVDLLHKITTYEGELKEANEKMRM 215
Query: 198 NK-TLPYLVSNVIELLDVDPQEE-EEDGAVVDLDSQRKGKCAV 320
++ + L + + + D ++ + VDLD + + AV
Sbjct: 216 HEDEIANLKNQLQSFMSFDTEDHLGAEQKSVDLDKEDTKEDAV 258
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/78 (23%), Positives = 32/78 (41%)
Frame = +3
Query: 126 VMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRK 305
V + +L+ K+K E +K++K + +EL+ P E ++ S +
Sbjct: 42 VQNVDFDLEKNEIKVKGKIEVVKIHKQIEKWSKKKVELISPKPSEVKKTTTTTTTTSVVE 101
Query: 306 GKCAVIKTSTRQTYFLPV 359
K IK +T L V
Sbjct: 102 KKTTEIKKDVIRTTVLKV 119
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 501 QYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
++ IG L+ Q L E V+LP+ E F L K L+GP
Sbjct: 85 EFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGP 130
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 480 VDERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
+D P ++ D+ L + + L EAVVLP+ E F + P K +FGP
Sbjct: 230 LDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRP--WKGVLMFGP 280
>At5g07220.1 68418.m00823 BAG domain-containing protein contains
Pfam:PF02179 BAG domain
Length = 303
Score = 29.1 bits (62), Expect = 2.6
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Frame = +3
Query: 30 EALSEEVLRMPTDEIVSRTRLLDNEIKIM-KSEVMRISHELQAQND-KIKENTEKIKVNK 203
E L ++LR+ D I++ D ++K+M K +V R+ ++A + K+K + +K++VNK
Sbjct: 176 EMLMNQLLRL--DAIIA-----DGDVKLMRKMQVQRVQKYVEALDLLKVKNSAKKVEVNK 228
Query: 204 TLPYLVSNVI-----ELLDVDPQEEEE 269
++ + +LL +EEEE
Sbjct: 229 SVRHKPQTQTRFEQRDLLSFVEEEEEE 255
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 501 QYSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGP 638
++ IG L+ Q L E V+LP+ E F L K L+GP
Sbjct: 82 EFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGP 127
>At5g58320.2 68418.m07301 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 558
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 18 EDGEEALSE-EVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIK 194
E+ E+ SE EVL + E L ++ ++SE+ R+ E++A++D+ E ++++
Sbjct: 447 EEEEKLKSEIEVLTLEKVEKGRCIETLSRKVSELESEISRLGSEIKARDDRTMEMEKEVE 506
>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
to M protein, serotype 5 precursor (SP:P02977)
{Streptococcus pyogenes} and to Myosin heavy chain,
non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
{Drosophila melanogaster}
Length = 537
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 66 DEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKI 191
DEI +++ L+ ++K + + R+S E++ Q +KE + I
Sbjct: 255 DEIEDKSKKLEYQVKEQEDIIQRLSMEIKDQKKLLKEQKDAI 296
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 471 AMEVDERPTEQYSDIGXLDKQIQELIEAVVLPMTHKEKF 587
A+ + P ++ D+G L+ +++ V LP+ HK+ F
Sbjct: 646 ALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLF 684
>At2g43990.1 68415.m05470 expressed protein
Length = 632
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/77 (22%), Positives = 36/77 (46%)
Frame = -3
Query: 562 NTTASINSCICLSRXPISEYCSVGLSSTSIAFTLASYSAGSVSKIK*ESLLTPTKSPGLS 383
++++S +S R P+ S+ ++ L S+ ++K +S LT + S
Sbjct: 82 SSSSSSSSLGVFPRRPVRSVAKNPKSAPVVSKPLIRKKPSSLEEVKLKSTLTEKPNLLKS 141
Query: 382 FSASTKPMTGKKYVCRV 332
T P++GK+ C++
Sbjct: 142 QRCKTNPVSGKRPTCKI 158
>At2g26570.1 68415.m03187 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
weak similarity to merozoite surface protein 3 alpha
(GI:27596802) [Plasmodium vivax]
Length = 807
Score = 28.3 bits (60), Expect = 4.6
Identities = 33/168 (19%), Positives = 71/168 (42%), Gaps = 1/168 (0%)
Frame = +3
Query: 69 EIVSRTRLLDNEIKIMKSEVMRI-SHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLD 245
+ V R +L++ E+K + E+ +H A+ K++ E + + L N ++
Sbjct: 193 QAVERRKLIEEELKKIHEEIPEYKTHSETAEAAKLQVLKELESTKRLIEQLKLN-LDKAQ 251
Query: 246 VDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 425
+ Q+ ++D + L + + S L V + +L V ++
Sbjct: 252 TEEQQAKQDSELAKLRVEEMEQGIAEDVSVAAKAQLEVAKARHTTAIT--ELSSVKEE-- 307
Query: 426 LILETLPAEYDARVKAMEVDERPTEQYSDIGXLDKQIQELIEAVVLPM 569
LETL EYDA V+ +V + E+ K++++ +E + + +
Sbjct: 308 --LETLHKEYDALVQDKDVAVKKVEEAM---LASKEVEKTVEELTIEL 350
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 504 YSDIGXLDKQIQELIEAVVLPMTHKEKFVNLGLPPTPKEFFLFGPS 641
+ DIG L+ L E V+LP E F L LFGPS
Sbjct: 734 FDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPS 779
>At1g28020.1 68414.m03431 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 612
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 384 LKPGDLVGVNKDSYLILETLPAEYDARVKAM 476
LK D+VG ++ Y + E+LP E+D R+ M
Sbjct: 326 LKVDDIVGA-EEIYKVWESLPLEFDHRIPTM 355
>At5g06850.1 68418.m00774 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 669
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 156 QNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 269
Q + ++ K+ V+ L YL NVIE DV+P + +
Sbjct: 74 QGEGVQSVRSKVYVSPKLWYLRVNVIEAQDVEPSDRSQ 111
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/72 (18%), Positives = 40/72 (55%)
Frame = +3
Query: 45 EVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVS 224
EVL+ ++ S+ + + +++I+++++ + +L+ ++ E+++ ++S
Sbjct: 1042 EVLQKEVNDFQSKENVTEKQVEILETQMEELQDKLRDTTMDNEQLQEQLRGKDMELLIIS 1101
Query: 225 NVIELLDVDPQE 260
N +ELL + +E
Sbjct: 1102 NEMELLTSELEE 1113
>At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3)
identical to non-phototropic hypocotyl 3 [Arabidopsis
thaliana] gi|6224712|gb|AAF05914, PMID:10542152
Length = 746
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 105 IKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVV 284
++++ SE ++IS+ L N +KE+T + T ++ N L++ PQ +E A
Sbjct: 596 VQVLFSEQVKISNALA--NTSLKESTTLGEAMGTYQPMIPNRKTLIEATPQSFQEGWAAA 653
Query: 285 DLD-SQRKGKCAVIKT 329
D + K + +KT
Sbjct: 654 KKDINTLKFELETVKT 669
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 27.5 bits (58), Expect = 8.0
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Frame = +3
Query: 117 KSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELL-----DVDPQEEEEDGAV 281
+S S ++Q+ K K + +KV L N ++ + +PQEEEE+
Sbjct: 662 RSAAQSSSQPKESQSSK-KNKGKAVKVVDPKETLADNFMDTVRRLQSSQNPQEEEEEAIS 720
Query: 282 VDLDSQR--KGKCAVIKTSTRQT 344
D ++ R KGK V+ T + T
Sbjct: 721 KDKNTYRSDKGKSQVVGTDSSST 743
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 261 EEEDGAVVDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILE 437
EEE V D + G+ + IK + + YF ++ E L + +KD L+ +
Sbjct: 2 EEESTLVRAEDPKHVGRVSSEIKPDSYRLYFKGLVSEETVELLAGFGVAICDKDDNLLFQ 61
Query: 438 TLPAEYDARVKAMEVD 485
+D+RV +EV+
Sbjct: 62 MKEQVHDSRVTVLEVE 77
>At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to
GTP-binding protein ERG SP:O82653 from [Arabidopsis
thaliana]
Length = 437
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 6 KSIWEDGEEALSEEVLRMPTDEIVSRTRLLDN 101
K WE+ +SEEVL+ + E+V R RLLD+
Sbjct: 330 KKPWEEDAFTMSEEVLKNISLEVV-RERLLDH 360
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,882
Number of Sequences: 28952
Number of extensions: 248101
Number of successful extensions: 913
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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