Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0707
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    38   0.001
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    37   0.002
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   6.1  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.1  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    26   6.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.1  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   8.1  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 19/60 (31%), Positives = 36/60 (60%)
 Frame = +2

Query: 368 NTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILVKTSQQL 547
           N S+  A+  LLK+ +G+GVL +P AFK  GL+      +++G++      +L++T  ++
Sbjct: 274 NASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLIQTRMKV 333


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 326 MGPYVPANHRPMESNTSS---FGALAHLLKASLGSGVLAMPLAFKNAGLLVGCI 478
           M  Y P +  P + +      F ++ +L    LG+G+L++P AF   GLL GC+
Sbjct: 1   MSGYSPLSSGPADVHIGKAGFFSSVINLANTILGAGILSLPNAFTKTGLLFGCL 54


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 689 LPYE*QPTTSPLVLWQSM 636
           LPY   PT+ P+V W S+
Sbjct: 280 LPYNPHPTSKPVVSWDSL 297


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 596 IVFQNGPKPIRKFASIARELVDWS 667
           I+ Q+G   ++KF  + RELV++S
Sbjct: 740 IMLQSGDMRVKKFLELIRELVEFS 763


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 449 KNAGLLVGCIGTMLIGLICGHVIHILVKTSQQLCVEV 559
           +NA LL+      L+GLICG  ++        LC+ V
Sbjct: 561 RNAKLLIAFTILFLVGLICGWRLNRFTMFIYYLCILV 597


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 233 KTKPSAPPIQLVMDDNYSSKIELAYNGSREDMGPYVPANH 352
           + K  + P+   + D+  SKI+L   G  +DM P +  +H
Sbjct: 178 QNKKRSQPVSQEVRDSILSKIQLEIEGLGKDMKPPIVNSH 217


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 398  LLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIG 496
            +LKAS+ S +L   + F N+   + C+G ++ G
Sbjct: 3560 VLKASVNSALLTSWICFLNSIGAINCVGIVVSG 3592


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 596 IVFQNGPKPIRKFASIARELVDWS 667
           ++F+ G K I+K   +  E +DW+
Sbjct: 439 VIFEAGQKAIKKLKRLMLERIDWT 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,195
Number of Sequences: 5004
Number of extensions: 75873
Number of successful extensions: 208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)