Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0707
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31) 48 6e-06
SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05) 42 4e-04
SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_58414| Best HMM Match : Aa_trans (HMM E-Value=3.1e-35) 35 0.057
SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42) 30 1.6
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_745| Best HMM Match : Aa_trans (HMM E-Value=0.047) 30 2.1
SB_27864| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_46723| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4) 28 6.5
SB_40988| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4) 28 6.5
SB_27407| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
Length = 974
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 305 YNGSREDMGPYVPANHRPMESNT-SSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIG 481
Y S +D + + H+ + F A++LKA +G+ LA+P AFK +GL +G +
Sbjct: 360 YTKSGDDRKTHTLSPHKCLRPTAWQQFTDFANVLKAFIGTSYLALPFAFKQSGLALGIVA 419
Query: 482 TMLIGLICGHVIHILVK 532
+LI I H +++K
Sbjct: 420 LVLIATITDHCCQMIIK 436
>SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)
Length = 332
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 359 MESNTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTML 490
M + T+SF +L HL+K +G GV MPLA AGLLV + M+
Sbjct: 99 MSNTTTSFTSLMHLIKGCVGIGVYGMPLAVAYAGLLVLPVENMM 142
>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/36 (41%), Positives = 27/36 (75%)
Frame = +2
Query: 359 MESNTSSFGALAHLLKASLGSGVLAMPLAFKNAGLL 466
+++ TS + L H+LKA++G G+L++P A NAG++
Sbjct: 69 LKNPTSEWQTLTHILKANIGPGMLSLPAAMMNAGIV 104
>SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 35.5 bits (78), Expect = 0.043
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +2
Query: 362 ESNTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILVKTSQ 541
E+ T SF A ++ A++G+G+LAMP + G G +L+ L+ + IL+
Sbjct: 23 ENETHSFQAFFNIFNANMGTGILAMPYVIRLTGYW-GVAIVILVALLGNYTGKILIHCLH 81
Query: 542 QLCVEVKKPALGYADTCE 595
+ E YAD E
Sbjct: 82 ENTPEGHFNKFTYADLGE 99
>SB_58414| Best HMM Match : Aa_trans (HMM E-Value=3.1e-35)
Length = 436
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 362 ESNTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILV 529
+ TS++ A + + GSG +A+P A G L G +G +L+ +I + HI+V
Sbjct: 40 DGTTSTWRATLNTINYMEGSGFVALPYAVARGG-LAGALGFILVPIIFTYTAHIMV 94
>SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 216 GHRRW--RRRSHQLLPFNLLWTITTARKLSWLTMDREKTWARTCQQTIDLWSQTPR 377
GHR ++ H+ L WT TT + +W T R +T T + W+ T R
Sbjct: 217 GHRPLDTKQPGHRPLDTEQTWTTTTRHRTTWTTTTRHQTTWTTTTRHRTTWTPTHR 272
>SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)
Length = 1451
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 257 IQLVMDDN-YSSKIELAYNGSREDMGPYVPANHRP--MESNTSS 379
++++ + N +S+ + Y G +GP VPA RP +++NTSS
Sbjct: 612 VEVIKESNAFSTSYAMFYCGQYNTIGPTVPATVRPATLQTNTSS 655
>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 362 ESNTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILV 529
+ S++ A + + G+G LA+P A G + G +G +L+ +I + +I V
Sbjct: 873 DGTNSTWRATLNTINYMEGTGFLALPYAVSRGG-IAGALGFILVPIILAYTAYISV 927
>SB_745| Best HMM Match : Aa_trans (HMM E-Value=0.047)
Length = 261
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +2
Query: 353 RPMESNTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILV 529
RP+ + +++ A+ + + G+G+LA+P + G L I +L ++ G+ ILV
Sbjct: 21 RPLLAGNTAWRAIFNCVNYLEGAGILAVPYTMQLGG-LPAVIAYILFPILAGYTARILV 78
>SB_27864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/58 (20%), Positives = 30/58 (51%)
Frame = +2
Query: 359 MESNTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILVK 532
+ + +S++ + + G+G LA+P A G L G + +G++ + ++L++
Sbjct: 30 LRNRSSTWRVTMNTINYMEGTGFLALPYAVSRGG-LAGALSFAFVGILMAYTSYLLIE 86
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 236 TKPSAPPIQLVMDDNYSSKIELAYNGSREDMGPYVPANHRPMESNTSSFGALAH 397
T S+ IQ +D SSK+ +R D +N + +E N SS GA+ +
Sbjct: 1380 TSQSSLSIQDEVDRRKSSKLTDDLQSNRTDTTSRSSSNEKVVERNASSLGAIGY 1433
>SB_46723| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4)
Length = 163
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/58 (20%), Positives = 30/58 (51%)
Frame = +2
Query: 359 MESNTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILVK 532
+ + +S++ + + G+G LA+P A G L G + +G++ + ++L++
Sbjct: 15 LRNRSSTWRVTMNTINYMEGTGFLALPYAVARGG-LAGALSFAFVGILMAYTSYLLIE 71
>SB_40988| Best HMM Match : Sm_multidrug_ex (HMM E-Value=1.4)
Length = 178
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/58 (20%), Positives = 30/58 (51%)
Frame = +2
Query: 359 MESNTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILVK 532
+ + +S++ + + G+G LA+P A G L G + +G++ + ++L++
Sbjct: 30 LRNRSSTWRVTMNTINYMEGTGFLALPYAVARGG-LAGALSFAFVGILMAYTSYLLIE 86
>SB_27407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/58 (20%), Positives = 30/58 (51%)
Frame = +2
Query: 359 MESNTSSFGALAHLLKASLGSGVLAMPLAFKNAGLLVGCIGTMLIGLICGHVIHILVK 532
+ + +S++ + + G+G LA+P A G L G + +G++ + ++L++
Sbjct: 30 LRNRSSTWRVTMNTINYMEGTGFLALPYAVARGG-LAGALSFAFVGILMAYTSYLLIE 86
>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 863
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +3
Query: 258 FNLLWTITTARKLSWLTMDREKTWARTCQQTIDLWSQTPRVSVPWP 395
+N W+ + W T R T T + WS R + PWP
Sbjct: 620 YNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWP 665
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,284,003
Number of Sequences: 59808
Number of extensions: 571428
Number of successful extensions: 1450
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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