Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0704
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 198 4e-51
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 62 4e-10
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 60 1e-09
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 59 3e-09
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 6e-08
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 54 1e-07
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 46 2e-05
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 46 4e-05
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 46 4e-05
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 45 6e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 44 1e-04
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 43 3e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 42 3e-04
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 42 5e-04
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 40 0.001
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 39 0.003
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 39 0.003
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 38 0.006
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 38 0.006
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 38 0.007
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 36 0.023
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 36 0.030
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 34 0.12
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 33 0.21
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 33 0.28
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 32 0.37
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 32 0.49
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 31 0.64
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 31 1.1
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 31 1.1
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_59647| Best HMM Match : Ank (HMM E-Value=0.00054) 29 2.6
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83) 29 3.4
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 3.4
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 29 3.4
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.4
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 29 3.4
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) 29 4.5
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 29 4.5
SB_13859| Best HMM Match : Exonuc_VII_S (HMM E-Value=5.7) 29 4.5
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74) 29 4.5
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1) 28 6.0
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 28 6.0
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 28 6.0
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 7.9
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047) 28 7.9
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 28 7.9
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 7.9
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 198 bits (482), Expect = 4e-51
Identities = 108/191 (56%), Positives = 133/191 (69%), Gaps = 4/191 (2%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLD 188
AE A LNGKE + G+ L+ GRA+K+AER E+K + E+ + ER+ R+QGVNLY+KNLD
Sbjct: 162 AEEAVNVLNGKE-IGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLD 220
Query: 189 DTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
D IDDERLR+EF+P+GTI+SAKVM +D G SKGFGFVCFSSPEEATKAVTEMNGRI+ +K
Sbjct: 221 DPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISK 280
Query: 366 PLYVALAQRKEDRKAHLTXXXXXXXXXXXXXXXXXIFQPSGASGFFVPSLPPA-PRYYGP 542
PLYVALAQR+E+RKA L + G FF P +P PR+ P
Sbjct: 281 PLYVALAQRREERKAQLA--------AQHMHRISGLRMHQGQRPFFTPQMPQVRPRWGMP 332
Query: 543 --AQMTQIRPT 569
Q Q+RPT
Sbjct: 333 PQQQQQQMRPT 343
Score = 84.6 bits (200), Expect = 7e-17
Identities = 50/138 (36%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Frame = +3
Query: 6 AAEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 185
AA A ++G L+ K ++VGR K ER +++ + ++ N+YVKN
Sbjct: 68 AALEAIARVDGM-LLNDKKVFVGRWMSKKERIEKMGTQPKKF----------TNVYVKNF 116
Query: 186 DDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 362
D +DDE++++ A G I S KVM + +G+SKGFGFV F +PEEA +AV +NG+ +G
Sbjct: 117 GDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGG 176
Query: 363 KPLYVALAQRKEDRKAHL 416
+ L+ A+++ +R A +
Sbjct: 177 RRLWAGRAKKRAERAAEV 194
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 62.1 bits (144), Expect = 4e-10
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKA 329
G NL++ NLD +D++ L F+ FG I ++ D G SKGF F+ F+S + + A
Sbjct: 99 GANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAA 158
Query: 330 VTEMNGRIVGTKPLYVALAQRKEDR 404
+ MNG+ + +P+ V+ A +KE +
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKESK 183
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 150 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEAT 323
R Q +YV LD+ + + + + F G + + + + +G+GFV F E+A
Sbjct: 9 RNQDATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDAD 68
Query: 324 KAVTEMNGRIVGTKPLYV 377
A+ MN V KP+ V
Sbjct: 69 YAIKVMNMIKVYGKPIRV 86
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 60.5 bits (140), Expect = 1e-09
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Frame = +3
Query: 6 AAEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 185
+A I L+G++L+ G P+ V Q + R L + E+LK LYV +L
Sbjct: 198 SAVPLAIGLSGQKLL-GAPIMVMLTQAEKNR---LAAEAERLKQP----LGPTRLYVGSL 249
Query: 186 DDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
I + ++ F PFGT+ S +++ E RSKG+GFV F E A +A+ +MNG +
Sbjct: 250 HFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELA 309
Query: 360 TKPLYVALAQRKEDRKAH 413
+PL + + D A+
Sbjct: 310 GRPLKIGPVTERGDSSAY 327
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 332
G NL++ +L D L + F PFGT+ SAKV + + SK FGFV + + A A+
Sbjct: 276 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAI 335
Query: 333 TEMNGRIVGTKPLYVALAQRKEDRKAH 413
MNG +G K L V L + K+ + +
Sbjct: 336 QHMNGFQIGAKRLKVQLKRPKDANRPY 362
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +3
Query: 138 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 311
E T + NL + + ++ E ++K F G +TS K++ + G+S G+ FV + +P
Sbjct: 19 ENGTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNP 78
Query: 312 EEATKAVTEMNGRIVGTKPLYVALAQ 389
++A KAV EMNG + K L V+ A+
Sbjct: 79 DDANKAVREMNGARLQNKTLKVSFAR 104
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 96 RQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DG 272
+ K LK F + S T + NLY+ L + +E + F PFG I ++KV+ + G
Sbjct: 94 QNKTLKVSFARPSS---TEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSG 150
Query: 273 RSKGFGFVCFSSPEEATKAVTEMNGR 350
+G GFV F EA A+ ++N +
Sbjct: 151 EGRGTGFVRFDKRCEAQTAIDDLNNK 176
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 335
QG ++V L L K F+P+G IT+ ++ L+ KG+GFV S+ EEA A+
Sbjct: 270 QGWCIFVYGLPQEATPLFLYKLFSPYGAITNIELKLD----KGYGFVNMSNYEEACHAIC 325
Query: 336 EMNG 347
+NG
Sbjct: 326 CLNG 329
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 344
Y+ NL ++D++ L ++F + KV+ E GR +GFGFV F S EE KA+ E +
Sbjct: 8 YIGNLSYSVDEQALEEKFHGCDVV-DVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFD 66
Query: 345 GRIVGTKPLYVALAQRKEDRKA 410
G+ +P+ V AQ + +R A
Sbjct: 67 GQDFDGRPMKVNQAQPRGERGA 88
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKA 329
+G LY+ NL+ D+ + + F FG + ++ E GRS+GFGFV S ++ A
Sbjct: 7 RGRKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPA 65
Query: 330 VTEMNGRIVGTKPLYVALAQRKEDRK 407
+ +MN VG + + VALA K + +
Sbjct: 66 IEKMNQSSVGGRNITVALALDKTENR 91
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +3
Query: 207 RLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 380
RL + F PFGT+ SAKV ++ SK FGFV + + A A+ MNG +G K L V
Sbjct: 277 RLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQ 336
Query: 381 LAQRKEDRKAH 413
L + K+ + +
Sbjct: 337 LKRPKDANRPY 347
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVC 299
G NL++ +L D L + F PFGT+ SAKV + + SK FG C
Sbjct: 228 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGECC 276
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Frame = +3
Query: 162 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 341
+++++ NL D+E L F G + +V+ ++GRS+GFG+ F+S E+ KA+ E+
Sbjct: 180 MSVFLGNLSFDADEETLAAFFEEKGLSATCRVITQEGRSRGFGYADFTSKEDYNKAL-EL 238
Query: 342 NGRIVGTKPLYVALAQRKEDR 404
NG + + + A K R
Sbjct: 239 NGEDCCGREIRINPANSKPSR 259
Score = 36.7 bits (81), Expect = 0.017
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +3
Query: 165 NLYVKNLD-DTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT 335
+L V+NL DT D A F ++AKV+ E G S+GFGFV + E A K ++
Sbjct: 290 SLIVRNLSYDTTTDSL----GAAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVLS 345
Query: 336 EMNGRIVGTKPLYVALAQRKED 401
EM G V + + + A + +
Sbjct: 346 EMAGAEVDGRQVRLDFASPRTE 367
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 39 KELVEGKPLYVGR-AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR 215
+ L K +Y +Q+K + R F L S+ + +++ L+ +E L+
Sbjct: 8 RRLTSSKIIYPESCSQRKPFQCFSASRPFALLPSKMSESEKLRKIFIGGLNWNTTEEGLK 67
Query: 216 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 332
F+ +GTI +M DGRS+GFGFV + S + + +
Sbjct: 68 DYFSQWGTIVDCVIMKRDGRSRGFGFVTYESSDSVNEVL 106
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
L V + + D+ R F ++ + K++ G S GFGFV +++ E+A KA+ ++
Sbjct: 49 LIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKL 108
Query: 342 NGRIVGTKPLYVALAQ 389
NG +G K L VA ++
Sbjct: 109 NGFTIGNKVLKVAFSR 124
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 329
+G NLYV N+ + + RK F +G I + +++ + G KG GFV + EA A
Sbjct: 131 KGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAA 190
Query: 330 VTEMNG 347
++ ++G
Sbjct: 191 ISSLSG 196
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +3
Query: 111 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KG 284
++K + + G LYV N+ + E + F G + +M + R KG
Sbjct: 258 QQKMTHMNGNKSQAPPGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKG 317
Query: 285 FGFVCFSSPEEATKAVTEMNGRIVGTKPL 371
F FV ++ EEA A+ +NG + KPL
Sbjct: 318 FCFVTMATQEEAQNAIQTLNGFMYTNKPL 346
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMN 344
YV L + +D++ L F PFG IT ++ ++ SK GFGFV F E+ A+ MN
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 345 GRIVGTKPLYVALAQ 389
+ + + V LA+
Sbjct: 68 ESELFGRTIRVNLAK 82
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
++ +L + DE L + FA + + AK++ + +SKG+GFV F P + KA+ EM
Sbjct: 219 IFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREM 278
Query: 342 N 344
N
Sbjct: 279 N 279
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 341
NLY++NL D+ L F+ +G + S +++ + D SKG GF S E+ + + +
Sbjct: 180 NLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDF 239
Query: 342 NGRIV 356
N +++
Sbjct: 240 NKKML 244
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTE 338
NLY++ L D+ L + +GTI S K +L+ + KG+GFV F SP A KAV
Sbjct: 101 NLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAA 160
Query: 339 M 341
+
Sbjct: 161 L 161
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
+YV +++ + +E +R F PFG I + + + + KGF FV + PE A A+ +M
Sbjct: 104 VYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQM 163
Query: 342 NGRIVGTKPLYV 377
NG ++G + + V
Sbjct: 164 NGVLLGGRNIKV 175
Score = 41.9 bits (94), Expect = 5e-04
Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Frame = +3
Query: 6 AAEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 185
AA+ A ++NG L+ G+ + VGR + L +FEQ ++++ R +Y+ ++
Sbjct: 155 AAQLALEQMNGV-LLGGRNIKVGRPSN-VPQAAPLIEQFEQ-EAKKYAR-----IYIASV 206
Query: 186 DDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 344
+ ++ ++ F FG + + E G+ KG+GF+ + + + A A+ MN
Sbjct: 207 HPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Frame = +3
Query: 174 VKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFG-----FVCFSSPEEATKAVT 335
V++LD+ ++ E + E + FGT++ + E G + FV F+SP+E KA +
Sbjct: 506 VEDLDEDLEHE-VTDECSKFGTVSRVVIYKEKQGEEEDAEVIVKIFVEFTSPDETDKATS 564
Query: 336 EMNGRIVG 359
++GR G
Sbjct: 565 NLDGRWFG 572
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKE----FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 335
+Y+KNL++ I E L+K F+ FG I V L+ + +G FV F AT A+
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDI-VALKTLKMRGQAFVVFKDIGSATNALR 67
Query: 336 EMNGRIVGTKPLYVALAQRKEDRKA 410
M G KP+ + A+ K D A
Sbjct: 68 SMQGFPFYDKPMRIQYAKGKSDAVA 92
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 264 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 401
E GR +GFGFV F S EE KA+ E +G+ + +P+ V A+ + D
Sbjct: 132 ETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGD 177
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 240 ITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 404
+ S KV+ E GR +GFGFV F S +E KA+ + +G + +P+ V AQ + +R
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGER 91
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED----GRSKGFGFVCFSSPEEATKAVT 335
L ++NL + L++ F+ FG ++ A V + R GFGFV F++ +A KA+
Sbjct: 249 LIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALE 308
Query: 336 EMNGRIVGTKPLYVALAQRK 395
EMN + + +P+ V A K
Sbjct: 309 EMNAKKILGRPVAVDWAVPK 328
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE---DGRSKGFGFVCFSSPEEATKAVTE 338
++V+NL I D + F G + ++ + R +GFG+V F+ E+A KA +
Sbjct: 22 IFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKA--K 79
Query: 339 MNGRIVGTKPLYVALAQRKEDRK 407
N + + +P+++ +++K K
Sbjct: 80 DNIKSIKGRPIHLDFSEKKARTK 102
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 105 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSK 281
E++ ++L S + Q +Y+++ I L F P+G I ++ + G+SK
Sbjct: 45 EIQHSIQELLSHKEEHDQRT-IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSK 103
Query: 282 GFGFVCFSSPEEATKAV 332
GFG+V + + E A +A+
Sbjct: 104 GFGYVTYENAESAQRAL 120
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +3
Query: 264 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 380
++ RS+GFGFV F++PE+A AV +NG+ V + L +A
Sbjct: 94 QEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIA 132
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 40.7 bits (91), Expect = 0.001
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Frame = +3
Query: 75 RAQKKAERQKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTIT 245
+A A ++K + + ++T+ +GV+ L V L + +++ F FG I
Sbjct: 83 KAADSASKRKIEESPIGKEPETKITKVEGVDVGDLIVLGLPYATTESEMKEYFTRFGEID 142
Query: 246 SAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 401
+V L+ RS+GFGFV F E+A K V + RI G + V L + KE+
Sbjct: 143 FCEVKLDPNTRRSRGFGFVRFKKDEDA-KNVLSTSHRIQG-RLCEVRLPRPKEE 194
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 338
+++V N+ +E+L++ F+ G + S +++ E G+ KG+GF + E A A+
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 339 MNGRIVGTKPLYVALAQRKEDRK 407
+NG + + L V A +++++
Sbjct: 86 LNGYELNGRALRVDSAASEKNKE 108
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 273 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 401
+SKGFGFV F E+A KA+ EM+ +G K + A RK +
Sbjct: 552 KSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 129 LKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG-FGFVCFS 305
L++ + +LYV NLD E + F + K M+ KG + FV F
Sbjct: 358 LRARYFPEEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCK-MINSPTDKGPYCFVEFE 416
Query: 306 SPEEATKAVTEMNGRIVGTKPLYV 377
+ +A +A M+ R V K L V
Sbjct: 417 THADAQEAKFRMDQRTVMDKKLKV 440
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITS 248
+++V +L + +D+ LRK F PFG I++
Sbjct: 459 HIFVGDLAENVDNALLRKTFEPFGEISA 486
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
++++ NL I++E LR+ F G + S +++ + G KGFG+V F S + A+
Sbjct: 57 SVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKM 116
Query: 339 MNGRIVGTK 365
N G K
Sbjct: 117 NNAEFKGRK 125
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK-----------------GFGFV 296
L+V N+ D LR+ F FG I +++ + SK GFGFV
Sbjct: 70 LHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFGFV 129
Query: 297 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 395
F++ EA KA ++NG IV + + V+L +
Sbjct: 130 TFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQ 162
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 38.7 bits (86), Expect = 0.004
Identities = 29/87 (33%), Positives = 48/87 (55%)
Frame = +3
Query: 135 SERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPE 314
+++L G ++V + T +E L++EF G + +V E RS+GF V F + E
Sbjct: 101 AKKLIASGGKTVFVSGIGLT--EEILKEEFNHLGHVE--RVNFEKNRSQGF--VTFDTWE 154
Query: 315 EATKAVTEMNGRIVGTKPLYVALAQRK 395
A KA+ EMNG V + V++A+R+
Sbjct: 155 AADKAIDEMNGLKVQHVHIRVSMARRQ 181
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/110 (23%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = +3
Query: 27 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT-RYQGVNLYVKNLDDTIDD 203
+L+G+++V+ + K + +L+ +QLK + + +++ + V NL + +
Sbjct: 135 KLSGQKIVQCRICKGDHWTTKCPYKDQLEVIHQQLKEDDGSGQHETATIRVTNLSEETRE 194
Query: 204 ERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 347
L++ F P G I+ + + +SKGF F+ F E+A +A+ ++G
Sbjct: 195 SDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +3
Query: 87 KAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 266
K++ +K LKR + L+ + ++ N N ++ ++ G + + E
Sbjct: 217 KSDLEKALKRNKDYLQGRYIELFKDTNRDFDNNKQGDGEKSWMRKLQEKGDDEEEEPIGE 276
Query: 267 D-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 401
++ G GFV F PE A KA E++G + + L++ A+ K++
Sbjct: 277 HTNKTIGIGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPAKAKKE 322
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 257
+GV L+VKNL +E L+++FA G + SA +
Sbjct: 532 EGVTLFVKNLSFESTEEALKQKFAAVGPVKSATI 565
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 201 DERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 332
D+ + + F+P + VM + G+ G FV FSS + KA+
Sbjct: 181 DKHILEFFSPLKPVAIRFVMNKKGQPSGCAFVDFSSKSDLEKAL 224
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 38.3 bits (85), Expect = 0.006
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKE-FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
L+V L + L KE F+ G +T A+V + +G S+GF FV +++ EEA K
Sbjct: 207 LFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRA 266
Query: 339 MNGRIVGTKPLYVA 380
NGR V + VA
Sbjct: 267 HNGRQVEGSNIRVA 280
Score = 32.3 bits (70), Expect = 0.37
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 341
L+V NL + + +P+G I ++ + G SKG+GFV +++ E A +A ++
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQL 174
Query: 342 ---NGRIVGTKPLYVALAQ 389
+ +G + L VA A+
Sbjct: 175 LNTASKYIGGRILRVAFAE 193
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +3
Query: 48 VEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFA 227
V P + ++ + R + +R + LYV +L ++ + +++ F+
Sbjct: 1119 VSKSPSPARKGKRSSSSSSSRSRSRSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFS 1178
Query: 228 PFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 347
+G + + + + + S+GF +V + PEE KA+ M+G
Sbjct: 1179 VYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDG 1220
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
+Y+ N+ D + +EF FG + V GF F F +A AV E++G
Sbjct: 4 VYIGNIGDNASKREIEREFETFGPLRDVWVARNP---PGFAFCVFEDRRDAEDAVRELDG 60
Query: 348 RIVGTKPLYVALAQ 389
R + + V LA+
Sbjct: 61 RYICGQRARVELAK 74
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/80 (26%), Positives = 41/80 (51%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 344
++YV+N+ + + +L+ F +G I + + + +GFV F+ E A +A+ +N
Sbjct: 3 SIYVRNVPLPMSETQLKAVFTKYGQIEKVR------KIRDYGFVYFAKRESAVQAIDGIN 56
Query: 345 GRIVGTKPLYVALAQRKEDR 404
G + L V+LA + R
Sbjct: 57 GAYIDGCKLEVSLAIPQSSR 76
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 35.9 bits (79), Expect = 0.030
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
L+V + D+ LRK FA FG I A V+ + +SKG+GFV ++ + A A
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNK 71
Query: 342 NGRIVG 359
I G
Sbjct: 72 RPMIEG 77
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +3
Query: 144 LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEAT 323
L R + +Y+ +L D + EF +G + V GF F F +A
Sbjct: 26 LRRAEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNP---PGFAFCIFDDRRDAE 82
Query: 324 KAVTEMNGRIVGTKPLYVALAQ 389
AV E++GR + + + V LA+
Sbjct: 83 DAVRELDGRYICGQRVRVELAK 104
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 344
L+V NL+ I + LR F FG + + G+ + FV F+ + A KA M
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAMQ 298
Query: 345 GRIVGTKPLYVALAQRKE 398
G+ +G + + + ++
Sbjct: 299 GQCIGRNHIKIGYGRSQQ 316
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 35.5 bits (78), Expect = 0.039
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
++V NLD I E L F+ G I ++ +DG+ + ++ F+ + A+ + +G
Sbjct: 74 VFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFAETQAIVSAL-QYSG 132
Query: 348 RIVGTKPLYVALAQRK 395
I G KP+ ++R+
Sbjct: 133 AIFGGKPIKSRSSRRR 148
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +3
Query: 480 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 659
P F+PS PP P + PA PT P + PP P+ A N P+ PA
Sbjct: 297 PPAPPNLFIPSAPPNP-HIPPAPPNPYIPTAPPNPSIPPAPPNPSIPPAPPN--PSIPPA 353
Query: 660 P 662
P
Sbjct: 354 P 354
>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 258 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 371
++++GR KG FV S E+A +A+ E++G ++ KP+
Sbjct: 285 LMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPI 322
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
Y+ NL ++D++ L ++F + + E GR +GFGFV + + K + +
Sbjct: 85 YIGNLSYSVDEQALEEKFHDCNVVDVRVITDRETGRPRGFGFVTLEAKKTRIKPLKNLTD 144
Query: 348 R 350
R
Sbjct: 145 R 145
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 344
L+V NL + + + F+ G + +++ G+ KG+G+V + A+ AV ++
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 345 GRIVGTKPLYVALA 386
V + + VAL+
Sbjct: 233 KTEVKGRTISVALS 246
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 329
+G L+V N+ + ++ + + F+ +G I + V L+ G KG+ V + + +EA A
Sbjct: 291 EGWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSA 350
Query: 330 VTEMNG 347
+ +NG
Sbjct: 351 LEALNG 356
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 507 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPS-TQAASAYANMQPTYRP 656
PS PP P Y P Q P P PP +PS S+Y QP+Y P
Sbjct: 514 PSYPPTPSSYLPTQ-----PYYPPPQPYPPTQPSYPPTPSSYPPTQPSYPP 559
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +3
Query: 507 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
PS PP +Y P Q P TP ++ PP +PS Y P+Y P P
Sbjct: 170 PSYPPTQPFYPPTQ--PFYPPTP--SSYPPTQPS------YPPTAPSYPPTP 211
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +3
Query: 204 ERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEA----TKAVTEMNGR--IVG 359
E LR+ F FG + VM + RS+GFGF+ F P+ E++G+ +
Sbjct: 122 EGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKMVTT 181
Query: 360 TKPLYV 377
TK +++
Sbjct: 182 TKKIFI 187
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
+YV NL + ++ L F +G I + G F FV F P +A AV +G
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRDG 322
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 189 DTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGR 350
D +DE L F G I ++M++ G +KGF F FS+ +EA AV +++ +
Sbjct: 162 DCFEDE-LIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKKLDNK 216
>SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 195 IDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEATKAVTEMNGR 350
+++E L + F +G + S K+M E R++ GFV + ++ KA+ + G+
Sbjct: 217 MNEEMLMRLFGKYGPLASVKIMWPRTEEEKSRNRNCGFVAYMRRKDGDKAIKHLTGK 273
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
+Y+ L ++ ++K F +G +++L+DG +GFV F ++A AV E NG
Sbjct: 5 VYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDG----YGFVEFDYSDDAEDAVYECNG 60
Query: 348 R 350
+
Sbjct: 61 K 61
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 344
+++ L + + + L + F FG + ++ E G+S+ GFV F S + A A MN
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMN 585
Query: 345 G 347
G
Sbjct: 586 G 586
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 273 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 398
R +GFGFV F S A KA + ++ K + V AQ KE
Sbjct: 10 RHRGFGFVTFESENSADKA-CDTQYHLINNKKVEVKKAQPKE 50
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 285 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 401
FGFV F + + A +AV + +GRI+ K + V + + D
Sbjct: 82 FGFVQFETEKGADEAVAKEHGRIINGKKIDVRIVNSRAD 120
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 522 APRYYGPAQMTQIRPTTPRWN-AQPPVRPSTQAASAYANMQPTYRP 656
+PR Y P +T +PR + PP RP T SA +P +P
Sbjct: 613 SPRLYTPKSITPKFILSPRQTLSAPPSRPKTAPTSAQRTPEPIRKP 658
>SB_59647| Best HMM Match : Ank (HMM E-Value=0.00054)
Length = 305
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 379 ATYNGLVPTIRPFISVTALVASSGEEKQTNPKPLLRPSSSITFADVIVPNGAN 221
A YNG +P ++ I + S +EK + P + + +V NGAN
Sbjct: 30 AAYNGDLPQLKMLIETGVVSISERDEKGSTPAHKAAGNGHVQVLQWLVENGAN 82
>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
Length = 242
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 507 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRA 668
P+ P P ++GP + RPT P + P+ P +A P P PR+
Sbjct: 33 PTTPSPPSHHGPISLRPHRPTIP--SPHDPITPRPHRPTAPRPHDP-IAPRPRS 83
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 480 PSGASGFFVPSLP---PAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTY 650
P+ AS + PS P P+ PA + PT+P ++ P + A+ +Y+ P+Y
Sbjct: 405 PAAASPGYSPSSPAFMPSSPSMSPASPSY-SPTSPGYSPSSPSSGYSPASPSYSPTSPSY 463
Query: 651 RP 656
P
Sbjct: 464 SP 465
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 501 FVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 656
F P P + P Q +Q +P P Q P RP Q + ++QP +P
Sbjct: 480 FQPGQSPQQPFL-PDQQSQ-KPFRPEQQPQQPFRPGQQPQQPFRSVQPPQQP 529
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 534 YGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 656
+ P Q Q +P+ P Q P RP Q + ++QP +P
Sbjct: 580 FRPGQQPQ-QPSRPGQQHQQPFRPEQQPQQPFRSVQPPQQP 619
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 39 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRK 218
K+ E K + + A+K+ + +KE K K E+ + ER R Y + + + +R R+
Sbjct: 747 KDRKERKKIEMEEAKKREQEEKERKEKEEKERIEREEREAKEREYAERIAKQNEIDRKRR 806
Query: 219 E 221
E
Sbjct: 807 E 807
>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 864
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 572 SCRSYLSHLSWSIVTWCWRERWYKKSTCTTRLEY 471
S + L ++SI W W R+Y ST T R+ Y
Sbjct: 787 SAATSLDTKTFSIEYWRWHHRFYSGSTATIRIFY 820
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 341
+++ L + ++++++++ + FG + + ++ + G SKG+ F + A+ +
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734
Query: 342 NGRIVGTKPLYVALA 386
NG +G K L V A
Sbjct: 735 NGMQLGDKKLIVQRA 749
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 480 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPV 599
P+G +P +PP P Y P P P+++ +PPV
Sbjct: 376 PTGVPPQMLPMMPPRPTVYHPPADDTYNPEQPQFD-RPPV 414
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 186 DDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNG 347
D+ +D+ L++ +A +++ G ++GFGFV F +PE A + + + G
Sbjct: 340 DEISEDDVLQELYAAEVAFRDVRIVRNKIGYTRGFGFVEFDTPEAAKEWMDYLKG 394
>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1933
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 644 GLHICICRCCLCARPYRGLCIPPWSCRSYLSHLSW 540
GL +C L A P W R+Y SH+SW
Sbjct: 1366 GLQLCAFEIGLFALGLHNRTSPNWLSRTYSSHVSW 1400
>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
Length = 328
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -1
Query: 662 RCWSVSGLHICICRCCLCAR--PYRGLCIPPWSCRSYLSHLSWSIVTWCWRERWYKKSTC 489
RC SV C C C CA + LC P WS L S++ CW++ + S
Sbjct: 231 RC-SVCTCCPCDCTCLQCAPCIVFSALCCPFWSL-----CLLCSMINSCWKQPFQSTSAL 284
Query: 488 TTRL 477
R+
Sbjct: 285 VLRM 288
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 261 LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
L+ GRSK +GFV F E KA+ I G K
Sbjct: 97 LKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQK 131
>SB_13859| Best HMM Match : Exonuc_VII_S (HMM E-Value=5.7)
Length = 198
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 93 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 206
E ++ELK K E+LK E+L Q V + + DD DD+
Sbjct: 35 EEKEELKSKCEKLKEEKLKMEQVVWWWDEYGDDDDDDD 72
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 231 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 377
+G I + ++ + G+ KGF F+C+ AV NG +G + + V
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRV 52
>SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = -1
Query: 632 CICRC---CLCARPYRGLCIPPW 573
C+CRC CLCA Y + +PP+
Sbjct: 16 CLCRCLCRCLCADVYVPMSMPPY 38
>SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74)
Length = 67
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 78 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTID 200
A++K K K K+ Q+K+ T++ YVKN+ D
Sbjct: 18 ARRKTSLIKNFKTKYRQIKNRLNTKFSRSIRYVKNIGKAFD 58
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 264 EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 353
E+G++ G GFV F+SPE A +A+ + +I
Sbjct: 74 EEGKTTGEGFVEFASPEIAGQAMQKHKEKI 103
>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -1
Query: 662 RCWSVSGLHICICRCCLCAR--PYRGLCIPPWSCRSYLSHLSWSIVTWCWRERWYKKSTC 489
RC SV C C C CA + LC P WS L S++ CW++ + S
Sbjct: 231 RC-SVCTCCPCDCPCLQCAPCIVFSALCCPFWSL-----CLLCSMINSCWKQPFQSTSAL 284
Query: 488 TTRL 477
R+
Sbjct: 285 VLRM 288
>SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)
Length = 762
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 334 VTALVASSGEEKQTNPKPLLRPSSSITFADVI 239
++ + +S KQT PK L+RP S D I
Sbjct: 651 ISGIPSSRSSRKQTEPKKLVRPESEYELEDEI 682
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 507 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 665
P LP +P PA + P P+ + PP+R + ++S A T PR
Sbjct: 481 PELPGSPGDSPPATSPKQPPLPPKHSNGPPLRQTPMSSSLSATPVSTPDTTPR 533
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 291 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 407
+V F E+A KAV ++N R +P+Y L+ + R+
Sbjct: 116 YVKFRYEEDAEKAVNDLNNRWYNGQPIYAELSPVTDFRR 154
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +3
Query: 537 GPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 647
G TQ+R TT QPP PS QA A PT
Sbjct: 1151 GNEHSTQVRNTTQAKPPQPPPVPSVQAPPAPPPAPPT 1187
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 279 KGFGFVCFSSPEEATKAVTEMNGR-IVGTK 365
+G+GFV F +A AV ++NGR ++G +
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGER 751
>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
Length = 841
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 75 RAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 221
R +++AE K QL+ ERL + V + + +T RLR+E
Sbjct: 580 RDRERAESASSKSEKVAQLREERLQSRERVQAFKTDYQETTLRRRLREE 628
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 503 CTIAPSSTTLLWTSSNDSNKTYNSKVE 583
CT+ ST L W++ D + YN +E
Sbjct: 836 CTVKECSTDLSWSTMTDMERVYNEFLE 862
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 638 HICICRCCLCARPYRGLCIPPWSCRS 561
++ CR R RGLC+PPW R+
Sbjct: 465 YVLSCRV-RTGRSIRGLCLPPWCSRA 489
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 147 TRYQGVNLYVKNLD-DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEE 317
T G +++ + D ++DE L G I ++ ++ G +KGF F F+
Sbjct: 148 TEESGTEVFIGKIPRDCLEDE-LIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTS 206
Query: 318 ATKAVTEMNGR 350
A +A+T +N +
Sbjct: 207 AYQAITTLNDK 217
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
PP+P Y P+ + P+ PR+ PP PS+ Y Y P+P
Sbjct: 335 PPSPPRY-PSSHPRYPPSPPRYPPSPPRYPSSH--PRYPPSPLRYLPSP 380
>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1748
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 81 QKKAERQKELKRKFEQLKSERLTRYQGVNLY-VKNLDDTIDDERLRKEFA 227
Q +E KEL +QL+ + +YQG +LY KN T+ + R A
Sbjct: 552 QDLSETNKELASYIDQLERSQNLQYQGKSLYKAKNKQRTLKEFLSRANLA 601
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,105,718
Number of Sequences: 59808
Number of extensions: 430275
Number of successful extensions: 1576
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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