Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0704
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              24   1.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   6.1  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 373 YNGLVPTIRPFISVTALVASSGEEKQTNPKPLLRPSSSITFADVI 239
           Y G  PT+R   S+    + S  E  T   PL   + +++F   +
Sbjct: 70  YGGEQPTLRLLCSIAGGTSESQWEDVTGSTPLTFVNDTVSFTTTV 114


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 142 RSDFSCSNLRFNSF*RSAFFCARPT*RGLPSTSSLP 35
           R+D S S+   +S   + F+  +PT    P  S LP
Sbjct: 368 RTDISSSSSSISSSEENDFWQPKPTLEDAPQNSLLP 403


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 540 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 665
           P  + Q RP  PR      +R   ++ +   N +P Y P PR
Sbjct: 75  PIYIPQPRPPHPR------LRREAESEAEPGNNRPVYIPQPR 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,879
Number of Sequences: 438
Number of extensions: 4321
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)