Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0704
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 172 2e-43
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 169 1e-42
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 164 5e-41
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 158 4e-39
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 151 3e-37
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 140 1e-33
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 133 1e-31
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 111 4e-25
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 62 3e-10
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 61 7e-10
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 60 1e-09
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 60 1e-09
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 58 4e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 58 5e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 58 5e-09
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 58 7e-09
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 58 7e-09
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 58 7e-09
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 58 7e-09
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 58 7e-09
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 57 9e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 57 1e-08
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 57 1e-08
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 57 1e-08
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 56 2e-08
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 56 2e-08
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 56 2e-08
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 56 3e-08
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 55 4e-08
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 55 4e-08
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 55 5e-08
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 55 5e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 54 7e-08
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 54 9e-08
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 54 1e-07
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 53 2e-07
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 53 2e-07
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 53 2e-07
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 52 3e-07
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 52 3e-07
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 52 3e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 52 5e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 52 5e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 51 6e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 51 6e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 51 6e-07
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 51 6e-07
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 51 8e-07
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 51 8e-07
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 50 1e-06
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 50 1e-06
At5g51300.2 68418.m06360 splicing factor-related contains simila... 50 1e-06
At5g51300.1 68418.m06359 splicing factor-related contains simila... 50 1e-06
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 50 1e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 50 2e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 50 2e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 49 2e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 49 3e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 49 3e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 49 3e-06
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 48 4e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 48 6e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 48 6e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 48 7e-06
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 48 7e-06
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 47 1e-05
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 47 1e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 47 1e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 46 3e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 45 4e-05
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 45 4e-05
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 44 9e-05
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 44 9e-05
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 44 9e-05
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 44 9e-05
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 44 9e-05
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 44 1e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 1e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 43 2e-04
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 43 2e-04
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 43 2e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 43 2e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 43 2e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 43 2e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 3e-04
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 42 4e-04
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 42 4e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 42 5e-04
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 41 6e-04
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 41 6e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 41 6e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 6e-04
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 40 0.001
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 40 0.001
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 40 0.001
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 0.001
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 40 0.001
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 0.001
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 40 0.001
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 40 0.001
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 40 0.001
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 40 0.001
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 40 0.001
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 40 0.002
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 40 0.002
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 40 0.002
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 40 0.002
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 40 0.002
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 39 0.003
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 39 0.003
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 39 0.003
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 39 0.003
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 38 0.005
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 38 0.005
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.006
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.006
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 37 0.011
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 37 0.011
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 37 0.011
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.011
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 37 0.014
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 37 0.014
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 37 0.014
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 36 0.018
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 36 0.018
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 36 0.032
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 36 0.032
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 36 0.032
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 35 0.043
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 35 0.043
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 35 0.043
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 35 0.043
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 35 0.056
At2g15500.1 68415.m01774 hypothetical protein 34 0.074
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 34 0.074
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 34 0.098
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 34 0.098
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 34 0.098
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 34 0.098
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 34 0.098
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.13
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.13
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.13
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 33 0.13
At4g10610.1 68417.m01735 RNA-binding protein, putative 33 0.17
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.17
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 33 0.17
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 33 0.17
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 33 0.17
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.23
At5g24440.1 68418.m02880 RNA-binding protein, putative 33 0.23
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.23
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.23
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c... 33 0.23
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c... 33 0.23
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 32 0.30
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 32 0.30
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 32 0.30
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 32 0.30
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t... 32 0.40
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.40
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.40
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.52
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.52
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.69
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 31 0.69
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.69
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 31 0.92
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 31 0.92
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 30 1.2
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 30 1.2
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 30 1.2
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 1.6
At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa... 30 1.6
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 30 1.6
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 2.1
At2g38250.1 68415.m04697 DNA-binding protein-related contains si... 29 2.1
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 2.1
At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) / cyclin-d... 29 2.1
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 29 2.8
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 29 2.8
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 29 2.8
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 2.8
At4g12440.2 68417.m01969 adenine phosphoribosyltransferase, puta... 29 2.8
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 29 2.8
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 29 3.7
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 29 3.7
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 3.7
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 29 3.7
At1g23540.1 68414.m02960 protein kinase family protein contains ... 29 3.7
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 28 4.9
At5g07820.1 68418.m00896 expressed protein 28 4.9
At4g35870.1 68417.m05094 expressed protein 28 4.9
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 28 4.9
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 28 6.5
At5g06640.1 68418.m00750 proline-rich extensin-like family prote... 28 6.5
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro... 28 6.5
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 6.5
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 28 6.5
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 6.5
At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof... 28 6.5
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 6.5
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 6.5
At2g31090.1 68415.m03797 expressed protein 28 6.5
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 27 8.5
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 27 8.5
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 27 8.5
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 27 8.5
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 27 8.5
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 8.5
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 8.5
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 8.5
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 27 8.5
At4g08400.1 68417.m01388 proline-rich extensin-like family prote... 27 8.5
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 27 8.5
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 27 8.5
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 27 8.5
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 27 8.5
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 27 8.5
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 172 bits (418), Expect = 2e-43
Identities = 81/138 (58%), Positives = 111/138 (80%), Gaps = 1/138 (0%)
Frame = +3
Query: 6 AAEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 185
AA A ++NG L + LYVGRAQKK+ER++EL+RKFEQ + R + QG NLY+KNL
Sbjct: 281 AAASAVEKMNGISLGDDV-LYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339
Query: 186 DDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 362
DD++DDE+L++ F+ +G +TS+KVML G S+GFGFV +S+PEEA +A++EMNG+++G
Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGR 399
Query: 363 KPLYVALAQRKEDRKAHL 416
KPLY+ALAQRKEDR+AHL
Sbjct: 400 KPLYIALAQRKEDRRAHL 417
Score = 83.8 bits (198), Expect = 9e-17
Identities = 55/138 (39%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Frame = +3
Query: 6 AAEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 185
+A+ A +LNG L+ K ++VG ++ ER ++ E + R T N+YVKNL
Sbjct: 188 SAQAAIDKLNGM-LMNDKQVFVGHFIRRQERARD-----ENTPTPRFT-----NVYVKNL 236
Query: 186 DDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 362
I ++ LRK F FG I+SA VM + G S+ FGFV F E A AV +MNG +G
Sbjct: 237 PKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGD 296
Query: 363 KPLYVALAQRKEDRKAHL 416
LYV AQ+K +R+ L
Sbjct: 297 DVLYVGRAQKKSEREEEL 314
Score = 74.1 bits (174), Expect = 8e-14
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +3
Query: 147 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEA 320
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GRSKG+GFV F E A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 321 TKAVTEMNGRIVGTKPLYVALAQRKEDR 404
A+ ++NG ++ K ++V R+++R
Sbjct: 190 QAAIDKLNGMLMNDKQVFVGHFIRRQER 217
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +3
Query: 18 ACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 137
A E+NGK ++ KPLY+ AQ+K +R+ L+ F Q+++
Sbjct: 388 ALSEMNGK-MIGRKPLYIALAQRKEDRRAHLQALFSQIRA 426
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 169 bits (412), Expect = 1e-42
Identities = 85/137 (62%), Positives = 106/137 (77%), Gaps = 1/137 (0%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLD 188
A A LNGK + K +VG+AQKK+ER+ ELK+KFEQ E + QG NLYVKNLD
Sbjct: 277 AARAVDALNGKTF-DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLD 335
Query: 189 DTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
+++ D++LR+ FAPFGTITS KVM + G S+G GFV FS+PEEAT+A+TEMNG+++ TK
Sbjct: 336 ESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTK 395
Query: 366 PLYVALAQRKEDRKAHL 416
PLYVALAQRKEDRKA L
Sbjct: 396 PLYVALAQRKEDRKARL 412
Score = 83.4 bits (197), Expect = 1e-16
Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Frame = +3
Query: 6 AAEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 185
AA+ A +LNG L+ K +YVG K +R E++K N+YVKNL
Sbjct: 185 AAQGAIDKLNGM-LLNDKQVYVGPFVHKLQRDPS----GEKVKF--------TNVYVKNL 231
Query: 186 DDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 362
+++ DE L K F FG TS +M + +G+SKGFGFV F + ++A +AV +NG+
Sbjct: 232 SESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDD 291
Query: 363 KPLYVALAQRKEDRKAHL 416
K +V AQ+K +R+ L
Sbjct: 292 KEWFVGKAQKKSERETEL 309
Score = 67.7 bits (158), Expect = 7e-12
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Frame = +3
Query: 150 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEAT 323
R GV N+++KNLD +ID + L + F+ FG I S KV ++ G+SKG+GFV + + E A
Sbjct: 128 RKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQ 187
Query: 324 KAVTEMNGRIVGTKPLYV 377
A+ ++NG ++ K +YV
Sbjct: 188 GAIDKLNGMLLNDKQVYV 205
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTE 338
+LYV +LD T+ D +L + F G + S +V + RS G+G+V +++P++A++A+ E
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 339 MNGRIVGTKPLYVALAQR 392
+N + + + V + R
Sbjct: 106 LNFMALNGRAIRVMYSVR 123
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 134
A A E+NGK +V KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 380 ATRAITEMNGKMIVT-KPLYVALAQRKEDRKARLQAQFSQMR 420
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 164 bits (398), Expect = 5e-41
Identities = 79/138 (57%), Positives = 108/138 (78%), Gaps = 1/138 (0%)
Frame = +3
Query: 6 AAEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 185
AA A ++NG L E LYVGRAQKK++R++EL+RKFEQ + R + QG NLY+KNL
Sbjct: 277 AAAVAVEKMNGISLGEDV-LYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNL 335
Query: 186 DDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 362
DD+++DE+L++ F+ +G +TS KVM+ G S+GFGFV +S+PEEA A+ EMNG+++G
Sbjct: 336 DDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGR 395
Query: 363 KPLYVALAQRKEDRKAHL 416
KPLYVALAQRKE+R+AHL
Sbjct: 396 KPLYVALAQRKEERQAHL 413
Score = 83.4 bits (197), Expect = 1e-16
Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLD 188
A+ A +LNG L+ K ++VG ++ +R + +S + + N+YVKNL
Sbjct: 185 AQAAIDKLNGM-LLNDKQVFVGHFVRRQDRARS--------ESGAVPSF--TNVYVKNLP 233
Query: 189 DTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
I D+ L+K F +G I+SA VM + G S+ FGFV F SPE A AV +MNG +G
Sbjct: 234 KEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGED 293
Query: 366 PLYVALAQRKEDRKAHL 416
LYV AQ+K DR+ L
Sbjct: 294 VLYVGRAQKKSDREEEL 310
Score = 74.9 bits (176), Expect = 4e-14
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +3
Query: 147 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEA 320
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GRSKG+GFV F E A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 321 TKAVTEMNGRIVGTKPLYVALAQRKEDR 404
A+ ++NG ++ K ++V R++DR
Sbjct: 186 QAAIDKLNGMLLNDKQVFVGHFVRRQDR 213
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +3
Query: 27 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 137
E+NGK ++ KPLYV AQ+K ERQ L+ F Q++S
Sbjct: 387 EMNGK-MIGRKPLYVALAQRKEERQAHLQSLFTQIRS 422
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 158 bits (383), Expect = 4e-39
Identities = 80/137 (58%), Positives = 103/137 (75%), Gaps = 1/137 (0%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLD 188
A A LNGK+ + K YVG+AQKK+ER+ EL R++EQ S+ ++ G+NLYVKNLD
Sbjct: 278 AARAVEALNGKKF-DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLD 336
Query: 189 DTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
DT+ DE+LR+ FA FGTITS KVM + G SKG GFV FS+ EA++ + EMNG++VG K
Sbjct: 337 DTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGK 396
Query: 366 PLYVALAQRKEDRKAHL 416
PLYVALAQRKE+R+A L
Sbjct: 397 PLYVALAQRKEERRAKL 413
Score = 85.4 bits (202), Expect = 3e-17
Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 2/140 (1%)
Frame = +3
Query: 6 AAEXACIELNGKELVEGKPLYVGRAQKKAERQKEL-KRKFEQLKSERLTRYQGVNLYVKN 182
+A+ A +LNGK L + K ++VG +K ER+ K KF N+YVKN
Sbjct: 186 SAKNAIEKLNGKVLND-KQIFVGPFLRKEERESAADKMKF-------------TNVYVKN 231
Query: 183 LDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
L + D+ L+ F +G+I+SA VM + DG+S+ FGFV F +PE+A +AV +NG+
Sbjct: 232 LSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFD 291
Query: 360 TKPLYVALAQRKEDRKAHLT 419
K YV AQ+K +R+ L+
Sbjct: 292 DKEWYVGKAQKKSERELELS 311
Score = 74.5 bits (175), Expect = 6e-14
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Frame = +3
Query: 150 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEAT 323
R GV NL+VKNLD ++D++ L + F+ GTI S KV + G+S+G+GFV F + + A
Sbjct: 129 RRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAK 188
Query: 324 KAVTEMNGRIVGTKPLYVALAQRKEDRKA 410
A+ ++NG+++ K ++V RKE+R++
Sbjct: 189 NAIEKLNGKVLNDKQIFVGPFLRKEERES 217
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +3
Query: 3 SAAEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 134
S A E+NGK +V GKPLYV AQ+K ER+ +L+ +F Q++
Sbjct: 379 SEASRVLNEMNGK-MVGGKPLYVALAQRKEERRAKLQAQFSQMR 421
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 151 bits (367), Expect = 3e-37
Identities = 73/137 (53%), Positives = 105/137 (76%), Gaps = 1/137 (0%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLD 188
A A LNG + + K YVGRAQKK+ER+ EL+ ++EQ E ++Q NLYVKNLD
Sbjct: 82 AARAVESLNGHKF-DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLD 140
Query: 189 DTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
+I DE+L++ F+PFGT+TS+KVM + +G SKG GFV F++PEEAT+A+++++G+++ +K
Sbjct: 141 PSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESK 200
Query: 366 PLYVALAQRKEDRKAHL 416
PLYVA+AQRKEDR+ L
Sbjct: 201 PLYVAIAQRKEDRRVRL 217
Score = 78.2 bits (184), Expect = 5e-15
Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Frame = +3
Query: 114 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFG 290
R+ E+ + T++ N+YVKNL ++ D+ L+ F +G ITSA VM + +G+SKGFG
Sbjct: 15 RRQERDSTANKTKF--TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFG 72
Query: 291 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 416
FV F + ++A +AV +NG K YV AQ+K +R+ L
Sbjct: 73 FVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 114
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/42 (42%), Positives = 29/42 (69%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 134
A A +L+GK ++E KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 185 ATEAMSQLSGK-MIESKPLYVAIAQRKEDRRVRLQAQFSQVR 225
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 140 bits (338), Expect = 1e-33
Identities = 75/139 (53%), Positives = 102/139 (73%), Gaps = 2/139 (1%)
Frame = +3
Query: 6 AAEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER-LTRYQGVNLYVKN 182
AA A ++NG +V+ K L+VGRAQ+K R ++LK KFE K R + +G+NLYVKN
Sbjct: 171 AAVTAIEKMNGV-VVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKN 229
Query: 183 LDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
LDD++D+ +L + F+ FGTITS KVM+ +G SKG GFV FS+ EEA+KA+ +MNG++VG
Sbjct: 230 LDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVG 289
Query: 360 TKPLYVALAQRKEDRKAHL 416
KP+YV+LAQ KE K HL
Sbjct: 290 NKPIYVSLAQCKEQHKLHL 308
Score = 76.6 bits (180), Expect = 1e-14
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 341
N+YVKNL +T D L++ F FG ITSA VM + +G+S+ FGFV F E A A+ +M
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 342 NGRIVGTKPLYVALAQRKEDRKAHL 416
NG +V K L+V AQRK +R L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDL 204
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 341
N++VKNLD++ID+++L F+ FG + S KV + G SKG+GFV F S A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 342 NGRIVGTKPLYV 377
NG ++ + ++V
Sbjct: 92 NGTLIRNQHIHV 103
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 122
A A +++NGK +V KP+YV AQ K + + L+ +F
Sbjct: 276 ASKAMLKMNGK-MVGNKPIYVSLAQCKEQHKLHLQTQF 312
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 133 bits (321), Expect = 1e-31
Identities = 69/137 (50%), Positives = 95/137 (69%), Gaps = 1/137 (0%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLD 188
A A +NG + K LYVGRAQKKAER++ L+ +F++ E+ + N+YVKN++
Sbjct: 254 ARRAAETVNGTKF-GSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVN 312
Query: 189 DTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
+ +E LRK F+ GTITS K+M ++ G+SKGFGFVCFS+PEEA AV +G++ K
Sbjct: 313 VAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGK 372
Query: 366 PLYVALAQRKEDRKAHL 416
PLYVA+AQ+KEDRK L
Sbjct: 373 PLYVAIAQKKEDRKMQL 389
Score = 81.4 bits (192), Expect = 5e-16
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLD 188
A A I+ +V K +YVG+ KK +R K E+ T NLY+KNLD
Sbjct: 164 AAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP---------EEKYT-----NLYMKNLD 209
Query: 189 DTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
+ ++ LR++FA FG I S + ++ R +G+ FV F +PE+A +A +NG G+K
Sbjct: 210 ADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSK 269
Query: 366 PLYVALAQRKEDRK 407
LYV AQ+K +R+
Sbjct: 270 CLYVGRAQKKAERE 283
Score = 69.3 bits (162), Expect = 2e-12
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +3
Query: 150 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEAT 323
R GV N++VKNL +++ + L+ F FG I S KV LEDG+S+G+GFV F + A
Sbjct: 107 RRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAH 166
Query: 324 KAVTEMNGRIVGTKPLYVALAQRKEDR 404
A+ +N IV K +YV +K DR
Sbjct: 167 AAIQTLNSTIVADKEIYVGKFMKKTDR 193
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
+LYV +L ++ + L FA F ++TS ++ + GRS +G+ F S ++A A+ +
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 339 MNGRIVGTKPLYVALAQRKEDRK 407
N ++ K + V + R D +
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDAR 107
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 42 ELVEGKPLYVGRAQKKAERQKELKRKF 122
++ GKPLYV AQKK +R+ +L+ +F
Sbjct: 367 QMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 111 bits (267), Expect = 4e-25
Identities = 65/134 (48%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERLTRYQGVNLYVKNL 185
A+ A L G +L K L+VG+A KK ER++ LK+KF + ++ R+ NLYVKNL
Sbjct: 255 AKKAMESLCGLQL-GSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWS--NLYVKNL 311
Query: 186 DDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 362
+++++ RLR+ F +G I SAKVM E+GRSKGFGFVCFS+ EE+ +A +NG +V
Sbjct: 312 SESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDG 371
Query: 363 KPLYVALAQRKEDR 404
KP+ V +A+RKEDR
Sbjct: 372 KPIVVRVAERKEDR 385
Score = 81.0 bits (191), Expect = 7e-16
Identities = 43/94 (45%), Positives = 58/94 (61%)
Frame = +3
Query: 129 LKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 308
L R TR NLYVKNLD +I L + F PFG+I S KV+ E+G+SKGFGFV F +
Sbjct: 101 LAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDT 160
Query: 309 PEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 410
+ A A + ++G +V K L+VA K++R A
Sbjct: 161 EQSAVSARSALHGSMVYGKKLFVAKFINKDERAA 194
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 341
N+YVKNL +T+ D+ L F+ +GT++S VM + GRS+GFGFV F +PE A KA+ +
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 342 NGRIVGTKPLYVALAQRKEDRKAHL 416
G +G+K L+V A +K++R+ L
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREML 287
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 30 LNGKELVEGKPLYVGRAQKKAERQKELKRKFE 125
LNG LV+GKP+ V A++K +R K L++ F+
Sbjct: 364 LNGF-LVDGKPIVVRVAERKEDRIKRLQQYFQ 394
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +3
Query: 150 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 323
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS + A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 324 KAVTEMNGRIVGTKPLYVALAQRK 395
A+ EM+G+ + + + V LA +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +3
Query: 150 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 323
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS + A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 324 KAVTEMNGRIVGTKPLYVALAQRK 395
A+ EM+G+ + + + V LA +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 62.1 bits (144), Expect = 3e-10
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
L+V L D+ LR+ F+PFG I A+++ E R KGFGF+ F S ++A KA+ +
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 342 NGRIVGTKPLYVALAQRKEDRKA 410
+G+IV + ++V +A+ E+ +A
Sbjct: 69 DGKIVDGRLIFVEVAKNAEEVRA 91
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 60.9 bits (141), Expect = 7e-10
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 341
L+ +L + ++D+ L K FA F T AKV+ + G++KG+GFV F +P + A+ EM
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 342 NGRIVGTKPLYVALAQRKE 398
NG+ VG +P+ + + KE
Sbjct: 199 NGKYVGNRPIKLRKSSWKE 217
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
L+V L +E+L+ FA FG + A+V+ + GRSKGFGFV +++ E+A KA EM
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 342 NGRIVGTKPLYVALAQRKEDRK 407
N + + ++V A+ +E R+
Sbjct: 96 NAKFLDGWVIFVDPARPREPRR 117
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKA 329
G NL++ NLD +D++ L F+ FG I S ++ D G S+GFGF+ + S E + A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 330 VTEMNGRIVGTKPLYVALAQRKEDR 404
+ M G+ + + + V+ A +K+ +
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKDTK 195
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +3
Query: 150 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEAT 323
R Q +YV LD + +E L + F G + + V + + +GF+ + S E+A
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80
Query: 324 KAVTEMNGRIVGTKPLYVALAQRKEDRKA 410
A+ +N + KP+ V A +D+K+
Sbjct: 81 YAIKVLNMIKLHGKPIRVNKA--SQDKKS 107
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKA 329
+G NL++ N+ D+ L F FG + SAKV ++ G SK FGFV + S A A
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNA 406
Query: 330 VTEMNGRIVGTKPLYVAL 383
+ MNGR +G K L V L
Sbjct: 407 IDMMNGRHLGGKKLKVQL 424
Score = 35.9 bits (79), Expect = 0.024
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 344
L+V L + + ++ F+ +GTI +++ SKG F+ + + E+A A+ +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 345 G--RIVG-TKPLYVALAQRKEDR 404
G ++ G T PL V A + +R
Sbjct: 168 GKHKMEGSTVPLVVKWADTERER 190
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +3
Query: 150 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 323
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+ AT
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 324 KAVTEMNGR 350
A++EM+G+
Sbjct: 91 AAISEMDGK 99
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +3
Query: 150 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 323
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+ AT
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 324 KAVTEMNGR 350
A++EM+G+
Sbjct: 91 AAISEMDGK 99
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 57.6 bits (133), Expect = 7e-09
Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 338
+L+VK D++ + RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV
Sbjct: 59 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 118
Query: 339 MNGRI 353
MNG++
Sbjct: 119 MNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 57.6 bits (133), Expect = 7e-09
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 338
+L+VK D++ + RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV
Sbjct: 78 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 137
Query: 339 MNGRIVGTKPLYVALAQ 389
MNG+ + + V Q
Sbjct: 138 MNGKFFDGRFILVKFGQ 154
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 57.6 bits (133), Expect = 7e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 332
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS +E KA+
Sbjct: 248 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 307
Query: 333 TEMNGRIVGTKPLYVALAQRKEDR 404
+NG + + + V+ A+ + R
Sbjct: 308 NSLNGADLDGRQIRVSEAEARPPR 331
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 138 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 311
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 312 EEATKAVTEMNGRIVGTKPLYV 377
E A + NG +PL V
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 57.6 bits (133), Expect = 7e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 332
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS +E KA+
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315
Query: 333 TEMNGRIVGTKPLYVALAQRKEDR 404
+NG + + + V+ A+ + R
Sbjct: 316 NSLNGADLDGRQIRVSEAEARPPR 339
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 138 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 311
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 312 EEATKAVTEMNGRIVGTKPLYV 377
E A + NG +PL V
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRV 172
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 57.6 bits (133), Expect = 7e-09
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Frame = +3
Query: 3 SAAEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY--------- 155
S E A + NG EL +G+PL V +R+ R + Y
Sbjct: 143 SEVEAAAQQFNGYEL-DGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAG 201
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 329
G +YV NL +DD L F+ G + A+V+ + GRSKGFGFV + S +E A
Sbjct: 202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261
Query: 330 VTEMNGRIVGTKPLYVALAQRKEDRKAH 413
+ ++G + + + V+ A+ + R+ +
Sbjct: 262 IKSLDGADLDGRQIRVSEAEARPPRRQY 289
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 162 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 335
+ L+V NL +D +L + F G + +V+ + GRS+GFGFV SS E A
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
Query: 336 EMNGRIVGTKPLYV 377
+ NG + +PL V
Sbjct: 151 QFNGYELDGRPLRV 164
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 57.2 bits (132), Expect = 9e-09
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLD 188
AE A + N +L G+ L V +A + R + R +E +YV NL
Sbjct: 204 AETAVEKFNRYDL-NGRLLTVNKAAPRGSRPERAPRVYEP----------AFRVYVGNLP 252
Query: 189 DTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 362
+D+ RL + F+ G + A+V+ E GRS+GFGFV S +E +A++ ++G+ +
Sbjct: 253 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEG 312
Query: 363 KPLYVALAQRKEDRKAH 413
+ + V +A+ + R+ +
Sbjct: 313 RAIRVNVAEERPPRRGY 329
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
L+V NL ++ + L F GT+ A+V+ E +S+GFGFV SS +EA AV +
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 342 N 344
N
Sbjct: 212 N 212
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 329
+G ++V L + D L + F+ FG I ++MLE GRS+GFGF+ F+ ++
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 330 VTEMNGRIVGTKPLYVALAQRKEDR 404
+ EM+GR G + + V A+ K R
Sbjct: 65 IREMHGRDFGDRVISVNRAEPKLGR 89
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 332
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S A A+
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397
Query: 333 TEMNGRIVGTKPLYVAL 383
MNG + K L V L
Sbjct: 398 NTMNGCQLSGKKLKVQL 414
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 344
L+V L + + ++ F+ +GTI +++ + SKG F+ + S E+A A+ +N
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170
Query: 345 GRIV---GTKPLYVALAQRKEDRKA 410
GR + PL V A +++R+A
Sbjct: 171 GRHIMEGANVPLIVKWADTEKERQA 195
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 332
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S A A+
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388
Query: 333 TEMNGRIVGTKPLYVAL 383
MNG + K L V L
Sbjct: 389 NTMNGCQLSGKKLKVQL 405
Score = 38.7 bits (86), Expect = 0.003
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Frame = +3
Query: 108 LKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKG 284
L+ K+ + ERL V + KN+ +T ++ F+ +GTI +++ + SKG
Sbjct: 86 LQVKYADGELERLEHKLFVGMLPKNVSET----EVQSLFSEYGTIKDLQILRGSLQTSKG 141
Query: 285 FGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDRKA 410
F+ + S E+A A+ +NGR + PL V A +++R+A
Sbjct: 142 CLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQA 186
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
++V +L + D L F +G++ AKV+L+ GRSKG+GFV F+ E +A+TE
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 339 MNGRIVGTKPLYVALAQRK 395
MNG+ T+P+ + A K
Sbjct: 216 MNGQYCSTRPMRIGPAANK 234
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Frame = +3
Query: 90 AERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE- 266
A R L + E R NL+V L E LR FA FG + AKV+ +
Sbjct: 32 ASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
Query: 267 -DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 413
G SKGFGFV +++ E++ K + M+G+ + ++ A+ +E +++
Sbjct: 92 VSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSY 141
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 150 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEAT 323
RY LY+ L D+ L+ F+ F +T A+VM GRS+G+GFV F S + A
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86
Query: 324 KAVTEMNGR 350
A++ MNG+
Sbjct: 87 SAISAMNGQ 95
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 338
+LY+ NLD + +E L F+ FG + + V+ +D G S+GF F+ F S + A +A+
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRS-VLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 339 MNGRIVGTKPLYVALAQRKED 401
M+GR++G K L V + ED
Sbjct: 77 MDGRLIGQKILCVQRTPKVED 97
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 338
N++V +L + D L F+ F + + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 339 MNGRIVGTKPL 371
MNG+ V ++ +
Sbjct: 209 MNGKWVSSRQI 219
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 344
++Y N+ + + L++ FA G I S K++ +D S +GFV + A+ A+ +N
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLN 121
Query: 345 GRIVGTKPLYVALAQ---RKEDRKAH 413
GR + +P+ V A ++ED +H
Sbjct: 122 GRHIFGQPMKVNWAYATGQREDTSSH 147
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 335
Q +YV NL + L + F G +V ++ R KGFGFV +++ +EA A+
Sbjct: 267 QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNTHDEAALAIQ 324
Query: 336 EMNGR 350
N +
Sbjct: 325 MGNAQ 329
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
+YV NL T D+ LR+ F+ +G + A VM + RS+GFGFV +SS EA AV+ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 342 NGRIVGTKPLYVAL 383
+G+ + + + V L
Sbjct: 65 DGKELNGRRVSVKL 78
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 338
N++V +L + D L + F+ F + + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 339 MNGRIVGTKPL 371
MNG+ + ++ +
Sbjct: 205 MNGKWLSSRQI 215
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 344
++YV N+ + + L++ F G + S+K++ +D S +GFV + A A+ +N
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS--YGFVHYFDRRSAALAILSLN 117
Query: 345 GRIVGTKPLYVALAQ---RKEDRKAH 413
GR + +P+ V A ++ED +H
Sbjct: 118 GRHLFGQPIKVNWAYATGQREDTSSH 143
Score = 30.7 bits (66), Expect = 0.92
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 332
Q +YV NL + L + F G +V ++ R KGFGFV +++ EA A+
Sbjct: 263 QFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQ--RDKGFGFVRYNTHPEAALAI 319
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 54.8 bits (126), Expect = 5e-08
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Frame = +3
Query: 9 AEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLD 188
AE A + N E V G+ L V RA + R + R ++ +YV NL
Sbjct: 167 AEKAVEKFNSFE-VNGRRLTVNRAAPRGSRPERQPRVYDA----------AFRIYVGNLP 215
Query: 189 DTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 362
+D RL + F+ G + A+V+ E GRS+GFGFV S+ E A+ ++G+ +
Sbjct: 216 WDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEG 275
Query: 363 KPLYVALAQRKEDR 404
+ + V +A+ + R
Sbjct: 276 RAIKVNVAEERTRR 289
Score = 45.2 bits (102), Expect = 4e-05
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
L+V NL +D + L F GT+ ++V+ + +S+GFGFV S+ EEA KAV +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 342 NGRIVGTKPLYVALAQRKEDR 404
N V + L V A + R
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSR 195
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +3
Query: 147 TRYQGV--NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPE 314
T+ +GV L++ L ++ L + F+ G + A+++++ RSKGFGFV F+S +
Sbjct: 27 TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASAD 86
Query: 315 EATKAVTEMNGRIVGTKPLYVALAQRKE 398
EA KA+ E NG+ + + ++V A+ K+
Sbjct: 87 EAQKALMEFNGQQLNGRTIFVDYAKAKQ 114
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
L++ + ++D++ LR+ F +G + +V+L E GRS+GFGFV F+S E A+ A+ +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 342 NGR 350
+GR
Sbjct: 102 DGR 104
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 54.0 bits (124), Expect = 9e-08
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +3
Query: 66 YVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTIT 245
Y+GRA K K K E L E T ++ L+V NL T+ E L F G +
Sbjct: 151 YLGRALKVNFADKPKPNK-EPLYPE--TEHK---LFVGNLSWTVTSESLAGAFRECGDVV 204
Query: 246 SAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 398
A+V+ + GRS+G+GFVC+SS E A+ ++G + + + V LAQ K+
Sbjct: 205 GARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
LY NL +D L + F +V+ + G+S+GF FV S+ E+ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 342 NGRIVGTKPLYVALAQRKEDRKAHL 416
+G + L V A + + K L
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPL 171
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +3
Query: 162 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 332
++++V +L + D L + F+ + ++ SAKV+++ GRSKG+GFV F E ++A+
Sbjct: 202 LSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRAL 261
Query: 333 TEMNGRIVGTKPLYVALAQRK 395
TEMNG + + V +A K
Sbjct: 262 TEMNGAYCSNRQMRVGIATPK 282
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
++V +D + DE LR+ F+ FG + S K+ + KG GFV F+ + A A+ +NG
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV----GKGCGFVQFADRKSAEDAIESLNG 378
Query: 348 RIVG 359
++G
Sbjct: 379 TVIG 382
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +3
Query: 162 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 332
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 197 LSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 333 TEMNG 347
TEMNG
Sbjct: 257 TEMNG 261
Score = 34.3 bits (75), Expect = 0.074
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGT--ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 335
++V +L +D+ L FA I S KV+ +G S+G+GFV F S + A K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 336 EMNG 347
E NG
Sbjct: 163 EFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +3
Query: 162 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 332
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 197 LSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 333 TEMNG 347
TEMNG
Sbjct: 257 TEMNG 261
Score = 48.0 bits (109), Expect = 6e-06
Identities = 33/134 (24%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Frame = +3
Query: 18 ACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG----VNLYVKNL 185
A E+NG + + + +G A + + +++ + + LTR +G ++V L
Sbjct: 255 AMTEMNGVKC-SSRAMRIGPATPR--KTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGL 311
Query: 186 DDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
D ++ DE L++ F FG I S K+ + KG GFV F + A +A+ ++NG ++G +
Sbjct: 312 DSSVTDEDLKQPFNEFGEIVSVKIPV----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQ 367
Query: 366 PLYVALAQRKEDRK 407
+ ++ + +++
Sbjct: 368 TVRLSWGRNPANKQ 381
Score = 34.3 bits (75), Expect = 0.074
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGT--ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 335
++V +L +D+ L FA I S KV+ +G S+G+GFV F S + A K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 336 EMNG 347
E NG
Sbjct: 163 EFNG 166
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/93 (26%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = +3
Query: 117 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFG 290
+F ++K+ + V+NL + ++ L++EF+ FG I K++ ++ RSKG+
Sbjct: 25 RFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYA 84
Query: 291 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 389
F+ F+S ++A A+ M+ R+ + +Y+ +A+
Sbjct: 85 FIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAK 117
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +3
Query: 162 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 332
++++V +L + D L + FA + ++ AKV+++ GRSKG+GFV F E ++A+
Sbjct: 213 LSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAM 272
Query: 333 TEMNGRIVGTKPLYVALAQRK 395
TEMNG ++ + V +A K
Sbjct: 273 TEMNGAFCSSRQMRVGIATPK 293
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
++V LD + +E L + F+ FG + S K+ + KG GFV F++ + A +A+ +NG
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV----GKGCGFVQFANRQSAEEAIGNLNG 384
Query: 348 RIVG 359
++G
Sbjct: 385 TVIG 388
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEF-APFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 335
+++V +L + D L++ F + ++ AKV+ + GRSKG+GFV F+ E +A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 336 EMNGRIVGTKPLYVALAQRKED 401
EMNG T+P+ ++ A K++
Sbjct: 177 EMNGLYCSTRPMRISAATPKKN 198
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +3
Query: 174 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 353
V NLD + +E L+K F+ G + K+ +KG+G+V F + A +AV M G++
Sbjct: 241 VANLDQNVTEEELKKAFSQLGEVIYVKIPA----TKGYGYVQFKTRPSAEEAVQRMQGQV 296
Query: 354 VGTKPLYVA 380
+G + + ++
Sbjct: 297 IGQQAVRIS 305
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
++V +L + D L + F A + ++ AKV+ + GRSKG+GFV F+ E +A+TE
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 339 MNGRIVGTKPLYVALAQRKE 398
MNG+ ++P+ A K+
Sbjct: 235 MNGQYCSSRPMRTGPAANKK 254
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +3
Query: 162 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 332
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 199 LSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Query: 333 TEMNG 347
TEMNG
Sbjct: 259 TEMNG 263
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/134 (24%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Frame = +3
Query: 18 ACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG----VNLYVKNL 185
A E+NG + + + +G A + + +++ + S TR +G ++V L
Sbjct: 257 AMTEMNGVKC-SSRAMRIGPATPR--KTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGL 313
Query: 186 DDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
D ++ DE L++ F+ FG I S K+ + KG GFV F + A +A+ ++NG ++G +
Sbjct: 314 DSSVTDEDLKQPFSEFGEIVSVKIPV----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQ 369
Query: 366 PLYVALAQRKEDRK 407
+ ++ + +++
Sbjct: 370 TVRLSWGRNPANKQ 383
Score = 34.7 bits (76), Expect = 0.056
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEF--APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 335
++V +L + +D+ L F A I S KV+ +G S+G+GFV F S + A K +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 336 EMNG 347
E NG
Sbjct: 165 EFNG 168
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
++V +L + D L + F A + ++ AKV+++ GR+KG+GFV FS E +A+TE
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 339 MNGRIVGTKPLYVALAQRKE 398
MNG T+P+ + A K+
Sbjct: 217 MNGVPCSTRPMRIGPAASKK 236
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
++V +L + D L + F A + ++ AKV+++ GR+KG+GFV FS E +A+TE
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 339 MNGRIVGTKPLYVALAQRKE 398
MNG T+P+ + A K+
Sbjct: 217 MNGVPCSTRPMRIGPAASKK 236
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 51.2 bits (117), Expect = 6e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 344
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 345 GRIVGTKPLYVALAQRK 395
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 51.2 bits (117), Expect = 6e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 344
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 345 GRIVGTKPLYVALAQRK 395
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 51.2 bits (117), Expect = 6e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 344
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 345 GRIVGTKPLYVALAQRK 395
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 51.2 bits (117), Expect = 6e-07
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Frame = +3
Query: 27 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG-VNLYVKNLDDTIDD 203
+LNG VEG+ + V +K +L L+SE +YV NL T+
Sbjct: 136 KLNGNT-VEGREIKVNITEKPIASSPDLS----VLQSEDSAFVDSPYKVYVGNLAKTVTK 190
Query: 204 ERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 356
E L F+ G + SAKV G SK GFGFV FSS E+ A+ +N ++
Sbjct: 191 EMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
+Y+ N+ T+ +E+L K G + +VM + GRS+ FGF S E+A V ++
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 342 NGRIVGTKPLYVALAQR 392
NG V + + V + ++
Sbjct: 138 NGNTVEGREIKVNITEK 154
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 50.8 bits (116), Expect = 8e-07
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEF--APFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 335
LYV NL LR+ F A F + SA+V+ D GRS G+GFV F++ EEA A+T
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 336 EMNGRIVGTKPLYVALAQR 392
++NG+ + +P+ + + R
Sbjct: 255 KLNGKEIMGRPITLKFSLR 273
Score = 45.2 bits (102), Expect = 4e-05
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +3
Query: 69 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 248
V + A+ + + K E+ ++ L R L+V NL ++ + + F GT+ +
Sbjct: 68 VAEKETSADEETSQEEKTEETQNSNLKR----KLFVFNLPWSMSVNDISELFGQCGTVNN 123
Query: 249 AKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 392
+++ + DG+++GF FV +S EEA A+ + + V + + V+ A+R
Sbjct: 124 VEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 172
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 50.8 bits (116), Expect = 8e-07
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV--- 332
++V L + D E L++ F FG I A V+L E G S+GFGFV + S E A A+
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 333 --TEMNGRIVGTKP 368
E++GRI+G P
Sbjct: 98 QNKELDGRIIGVHP 111
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = +3
Query: 201 DERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 380
D+ LR+ FAPF + + + R KGFGF+ F S ++A KA+ +NG+IV + ++V
Sbjct: 84 DQSLRQLFAPFARLIKDQ---QTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVE 140
Query: 381 LAQRKE 398
A+ E
Sbjct: 141 TAKEVE 146
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITS----AKVMLED--GRSKGFGFVCFSSPEEATK 326
N++V +L + D L F+ F + +S A+VM + GRS+GFGFV F + ++A
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208
Query: 327 AVTEMNGRIVGTKPL 371
A+ EMNG+ V ++ +
Sbjct: 209 AINEMNGKWVSSRQI 223
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 344
++Y N+ + + L++ FA G I S K++ +D S +GFV + A+ A+ +N
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLN 121
Query: 345 GRIVGTKPLYVALAQ---RKEDRKAH 413
GR + +P+ V A ++ED +H
Sbjct: 122 GRHIFGQPMKVNWAYATGQREDTSSH 147
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 335
Q +YV NL + L + F G +V ++ R KGFGFV +++ +EA A+
Sbjct: 271 QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNTHDEAALAIQ 328
Query: 336 EMNGR 350
N +
Sbjct: 329 MGNAQ 333
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 153 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATK 326
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++ + A
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANT 536
Query: 327 AVTEMNGRIVGTKPLYVALA 386
AV MNG + L V +A
Sbjct: 537 AVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 153 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATK 326
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++ + A
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANT 536
Query: 327 AVTEMNGRIVGTKPLYVALA 386
AV MNG + L V +A
Sbjct: 537 AVQAMNGYRFEGRTLAVRIA 556
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 338
N++V +L + D L F+ + T + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 339 MNGRIVGTKPL 371
+ G+ +G++ +
Sbjct: 200 ITGKWLGSRQI 210
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 344
++YV N+ + + L++ FA G + S K++ ++ S +GFV + A A+ +N
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS--YGFVHYFDRRSAGLAILSLN 112
Query: 345 GRIVGTKPLYVALAQ---RKEDRKAH 413
GR + +P+ V A ++ED +H
Sbjct: 113 GRHLFGQPIKVNWAYASGQREDTSSH 138
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 332
Q +YV NL + L + F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 258 QYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHVEAALAI 314
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+ A A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 342 NGRIVGTKPLYVALAQRK 395
+GR +G K + V A+ K
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+ A A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 342 NGRIVGTKPLYVALAQRK 395
+GR +G K + V A+ K
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
L++ L ++D++ L+ F+ FG + ++ + GRS+GFGFV F+ +A A M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 342 NGRIVGTKPLYVALA 386
+G+ + +PL ++ A
Sbjct: 103 DGKGLLGRPLRISFA 117
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 344
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 345 G 347
G
Sbjct: 69 G 69
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/80 (33%), Positives = 41/80 (51%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
LYVKN+ + E+L++ F G +T G + FGFV ++ A KAV +
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
Query: 348 RIVGTKPLYVALAQRKEDRK 407
V +PL V LA+ + +RK
Sbjct: 354 YEVNGQPLEVVLAKPQAERK 373
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 332
G +++ L + +E LR G I ++M + G SKG+ FV F + + A KA+
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 333 TEMNGRIVGTKPLYVALAQRK 395
E++ + K + +L++ K
Sbjct: 175 EELHSKEFKGKTIRCSLSETK 195
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 344
++ L T D LR F +G + AKV+L+ GRS+GFGF+ F + +A+ MN
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 345 GRIVGTKPLYVALAQ 389
G + + + V AQ
Sbjct: 70 GMDLDGRTITVDKAQ 84
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 341
L+VK + + +E L + F+ +G + V+++ R KGF +V FSS EEA KA+ E+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 342 NGRIV 356
N ++V
Sbjct: 83 NAQLV 87
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +3
Query: 144 LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEA 320
+T G ++YV L I +E +R+ F+ +G++ + K++ + R K +GFV FS+ A
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 321 TKAVTEMNGRIVGTKPLYV 377
A+ +M+G+ +G + + V
Sbjct: 61 DDAIEDMDGKSIGGRAVRV 79
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +3
Query: 135 SERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 308
S+ +R+ ++ V NL + L + F PFG +T V ++ S+GFGFV F S
Sbjct: 165 SDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVS 224
Query: 309 PEEATKAVTEMNG 347
E+A +A+ ++NG
Sbjct: 225 REDAQRAINKLNG 237
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
++V + + D+ LR+ F+ +G + AK+++ E GRS+GF FV F+S EEA+ A+ ++
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QL 94
Query: 342 NGR 350
+G+
Sbjct: 95 DGQ 97
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 341
LYV L ++ LR F FG + ++++ R KGF F+ + + EEA KA+ M
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 342 NGRIVGTKPLYVALAQRKED 401
+G+ + + ++V A+ + D
Sbjct: 139 HGKFLDGRVIFVEEAKTRSD 158
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
+Y NL + + L+ F + AKV+ E GRS+GFGF+ F S E A+ M
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 342 NGRIVGTKPLYVALAQRKE 398
NG V + L + LA +E
Sbjct: 281 NGVEVEGRALRLNLASERE 299
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +3
Query: 69 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 248
V ++ E E + + E+ K + LYV NL TI L + F GT+
Sbjct: 85 VEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144
Query: 249 AKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 377
+++ + RS+GFGFV S EEA +A+ N +G + + V
Sbjct: 145 VQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
L++ L ++ LR F FG + K++++ RSKG+ F+ +++ E A A+ EM
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 342 NGRIVGTKPLYVALAQRKEDRK 407
NG+I+ + V +A+ K R+
Sbjct: 344 NGKIINGWMIVVDVAKTKPFRQ 365
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +3
Query: 174 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 347
V NL + + L + F PFG +T V ++ G S+GFGFV F S E+A +A+ ++NG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE 338
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 339 ---MNGRIVGTK 365
++GR+V K
Sbjct: 67 KHNIDGRLVEAK 78
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 335
++V L ++ + + F FGT T VM + R +GFGF+ + S E K +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 336 --EMNGRIVGTK 365
E+NG++V K
Sbjct: 170 FHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE 338
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 339 ---MNGRIVGTK 365
++GR+V K
Sbjct: 67 KHNIDGRLVEAK 78
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 335
++V L ++ + + F FGT T VM + R +GFGF+ + S E K +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 336 --EMNGRIVGTK 365
E+NG++V K
Sbjct: 170 FHELNGKMVEVK 181
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 341
L+V + D+++LR+ F +G ++ A VM + GR +GFGFV FS P + + E
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 342 NGRIVGTKPLYVALAQRKEDRK 407
+ + T+ + V A +E+++
Sbjct: 68 HS--IDTREVDVKRAMSREEQQ 87
Score = 44.0 bits (99), Expect = 9e-05
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Frame = +3
Query: 30 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN----LYVKNLDDTI 197
L K ++ + + V RA + E+Q + + L + R + N ++V L T+
Sbjct: 64 LQEKHSIDTREVDVKRAMSREEQQ--VSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTL 121
Query: 198 DDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 371
DE R+ F +G +T +M + R +GFGFV F S E+A +V + K +
Sbjct: 122 TDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLHKTFHDLSGKQV 180
Query: 372 YVALAQRKE 398
V A K+
Sbjct: 181 EVKRALPKD 189
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 344
+V L DD L FA +G + +K++ E GRS+GFGFV F + A+ MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 345 GRIVGTKPLYVALAQRK 395
G+ + + + V AQ +
Sbjct: 71 GQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 344
+V L DD L FA +G + +K++ E GRS+GFGFV F + A+ MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 345 GRIVGTKPLYVALAQRK 395
G+ + + + V AQ +
Sbjct: 71 GQDLDGRSITVNEAQSR 87
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 46.8 bits (106), Expect = 1e-05
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Frame = +3
Query: 24 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE--RLTRYQGV--NLYVKNLDD 191
I L+G+ L+ G+P+ V K +E +K L + L Y G LYV NL
Sbjct: 240 IALSGQPLL-GQPVMV----KPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHI 294
Query: 192 TIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 353
+ ++ LRK F FG++ +V E G KGFGFV F+ E+A A+ +NG++
Sbjct: 295 NMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLNGQL 348
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +3
Query: 132 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 305
K+E + + + LYV N+ + D +L F PFGT+ S +V + G S+G G+V
Sbjct: 98 KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMG 157
Query: 306 SPEEATKAVTEMNGRIVGTKPLYV 377
S A A+ ++G VG + + V
Sbjct: 158 SINSAKIAIASLDGTEVGGREMRV 181
Score = 44.4 bits (100), Expect = 7e-05
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Frame = +3
Query: 3 SAAEXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LY 173
++A+ A L+G E V G+ + R + + +R E L S +++ Y+ + +Y
Sbjct: 160 NSAKIAIASLDGTE-VGGREM---RVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVY 215
Query: 174 VKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
V NL + LR F+ FGTI S +V+ + GR++ F F+ F+S EE A++ NG
Sbjct: 216 VGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNG 274
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEA 320
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 177 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADG 236
Query: 321 TKAVTEMNGRIV 356
A EM G IV
Sbjct: 237 QAAKDEMQGIIV 248
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
LYV NLD ++ + + F+ FG + V+ + +S+G FV + S E+A KA M
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 342 NGRIVGTKPLYVALA 386
+ +I+ + L V++A
Sbjct: 119 DAKILNGRKLTVSIA 133
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 338
L++ + D+ERL++ F +G + A +M + GR++GFGF+ F+ P A + + +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 339 --MNGRIVGTK 365
++GR V K
Sbjct: 77 HIIDGRTVEAK 87
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 329
++V L +I + + F FGTI VM + R +GFGF+ F S E K
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 183
Query: 330 VTEMNGRIVGTK 365
E+NG++V K
Sbjct: 184 FHELNGKMVEVK 195
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 341
LYV L D +++ L F PFG I K L+ K FGFV F E+A+ A+ M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 342 NG 347
+G
Sbjct: 75 DG 76
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEA 320
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADG 244
Query: 321 TKAVTEMNGRIV 356
A +M G IV
Sbjct: 245 EAAKEKMQGIIV 256
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.0 bits (99), Expect = 9e-05
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Frame = +3
Query: 99 QKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 269
Q+ + R + L+S RLT ++ L+++ L E LR F+ +G + A V+L+
Sbjct: 51 QEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDK 110
Query: 270 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
G+SKG+GFV F + A A+ E + +I G
Sbjct: 111 VTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.0 bits (99), Expect = 9e-05
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Frame = +3
Query: 99 QKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 269
Q+ + R + L+S RLT ++ L+++ L E LR F+ +G + A V+L+
Sbjct: 51 QEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDK 110
Query: 270 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
G+SKG+GFV F + A A+ E + +I G
Sbjct: 111 VTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 189 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 362
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
Query: 363 K 365
K
Sbjct: 86 K 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 189 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 362
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
Query: 363 K 365
K
Sbjct: 86 K 86
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 338
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 339 --MNGRIVGTK 365
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.7 bits (96), Expect = 2e-04
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Frame = +3
Query: 39 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDDER 209
K +++G+ + +A + ++Q LKR + G ++V L +I +E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQV-LKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 210 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 365
+ F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 338
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 339 --MNGRIVGTK 365
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.7 bits (96), Expect = 2e-04
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Frame = +3
Query: 39 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDDER 209
K +++G+ + +A + ++Q LKR + G ++V L +I +E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQV-LKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 210 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 365
+ F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 338
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 339 --MNGRIVGTK 365
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.7 bits (96), Expect = 2e-04
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Frame = +3
Query: 39 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDDER 209
K +++G+ + +A + ++Q LKR + G ++V L +I +E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQV-LKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 210 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 365
+ F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMN 344
L+ NL I + F G + ++ +DG KG+G + F+SPEEA KA+ EMN
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL-EMN 444
Query: 345 GRIVGTKPLYVALAQRK 395
G+++ + + + LA +
Sbjct: 445 GKLLLGRDVRLDLANER 461
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
+L V+NL E LRK F FG + + + G +GFGFV F P +A A
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 339 MNGRIVGTKPLYVALAQRKEDRK 407
M+G ++ + L V A+ E+RK
Sbjct: 97 MDGYLLLGRELTVVFAE--ENRK 117
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 189 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 362
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85
Query: 363 K 365
K
Sbjct: 86 K 86
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 335
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
Query: 336 --EMNGRIVGTK 365
E+NG++V K
Sbjct: 95 FHELNGKMVEVK 106
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 335
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 336 --EMNGRIVGTK 365
E+NG++V K
Sbjct: 168 FHELNGKMVEVK 179
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 329
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P A +
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 330 VT---EMNGRIVGTK 365
V ++G+IV K
Sbjct: 64 VLLKHIIDGKIVEAK 78
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 335
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 336 --EMNGRIVGTK 365
E+NG++V K
Sbjct: 168 FHELNGKMVEVK 179
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 329
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P A +
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 330 VT---EMNGRIVGTK 365
V ++G+IV K
Sbjct: 64 VLLKHIIDGKIVEAK 78
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
+L V+NL E LR+ F FG + + + G +GFGF+ F P +A +A +
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 339 MNGRIVGTKPLYVALAQRKEDRK 407
M+G ++ + L V A+ E+RK
Sbjct: 98 MDGYLLLGRELTVVFAE--ENRK 118
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 42.7 bits (96), Expect = 2e-04
Identities = 31/76 (40%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 341
+YV L E L F FG I AKV+ + RSKGFGFV F E AT+A
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 342 N----GRIVGTKPLYV 377
N GR V K Y+
Sbjct: 71 NHTIDGRTVNCKLAYL 86
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 341
++V L + +R+ F FG I A V+ + GRSKG+GFV F E A +A M
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 342 NGRIVGTK 365
N I G +
Sbjct: 84 NPVIDGRR 91
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA----- 329
+V+ LD D++ L F+ FG + +K++ + G+S+ FGFV F + T A
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 330 VTEMNGRIVGTKPLYVALA-QRKEDRKA 410
V E + V + V +A QR+++R A
Sbjct: 70 VEESRSKCVNVGSITVEVARQRRKNRSA 97
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 171 YVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 344
+V L D++ + + F FG + +K+++ E GRSKGF FV F + A+ MN
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 345 GR 350
G+
Sbjct: 107 GQ 108
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 341
++V L E LR+ F +G I A V+ + GRSKG+GFV F PE A +A +
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 342 NGRIVGTK 365
I G +
Sbjct: 86 TPIIDGRR 93
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 341
++V L E LR+ F +G I A V+ + GRSKG+GFV F PE A +A +
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDP 85
Query: 342 NGRIVGTK 365
I G +
Sbjct: 86 TPIIDGRR 93
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
LYV NL + + +LR+ F FG + ++ L E G+ KGFGF+ F E + A +
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 342 NGRI 353
NG++
Sbjct: 327 NGKL 330
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 168 LYVKNLDDT-IDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 341
+ VKNL + +ERLR F+ G I K+ + DG+S+ F ++ F + +EA A+T +
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63
Query: 342 NGRIVGTKPLYVALA 386
N + T + V +A
Sbjct: 64 NKCFIDTYRISVEVA 78
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 341
L V+ LD+ D+E LR EF+ I +++ + S+GF FV F S E+ATKA+
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 342 N 344
N
Sbjct: 520 N 520
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
L V + ID + L+ + FG + VM + GRS+GFG+V F+S E+A A+
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--K 62
Query: 342 NGRIVGTKPLYVALAQRKEDRK 407
+G + L V +A KE+ +
Sbjct: 63 GEHFLGNRILEVKVATPKEEMR 84
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Frame = +3
Query: 75 RAQKKAERQKELK-RKFEQLKSERLTRYQ----GVNLYVKNLDDTIDDERLRKEFAPFGT 239
R +K ++RQ+ L R FE L S+ Q G + V + + +E + F FG
Sbjct: 61 REEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGE 120
Query: 240 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 347
I + + L+ G KG+ + + EEA A++ MNG
Sbjct: 121 IKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 210 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 210 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAV 332
G +LYV L + + L FA G +T ++L+ S+GFGF+ S +A + +
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 333 TEMNGRIVGTKPLYVALAQRKEDR 404
++ ++ + + V A+R+ R
Sbjct: 134 RSLDHSVLQGRVITVEKARRRRGR 157
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Frame = +3
Query: 84 KKAERQKELKR--KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 257
+K + ++ L R K +K+ TR ++V L ++++ L+ F +G I ++
Sbjct: 133 RKVDLKRTLPRGDKDTDIKAVSKTR----KIFVGGLPPLLEEDELKNYFCVYGDIIEHQI 188
Query: 258 MLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 395
M + GRS+GFGFV F + + + ++ +G K + + A+ K
Sbjct: 189 MYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
L+V + E F FG + + +M + G +GFGFV F+ A K + E
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +3
Query: 96 RQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-- 269
+Q E+KR + S ++ ++V + ++DD+ ++ F FG + ++M +
Sbjct: 109 KQVEIKRTIPR-GSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHST 167
Query: 270 GRSKGFGFVCFSSPE 314
GRS+GFGFV + S +
Sbjct: 168 GRSRGFGFVTYESED 182
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
++V L K F +G IT + +M + G+ +GFGFV ++ K + +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD- 102
Query: 342 NGRIVG 359
N I+G
Sbjct: 103 NHIIIG 108
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 41.1 bits (92), Expect = 6e-04
Identities = 29/110 (26%), Positives = 55/110 (50%)
Frame = +3
Query: 78 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 257
+Q+ +R + E + E L+R L+V+N+D +I+D L F FG + +
Sbjct: 187 SQRDGKRGSNVSTVAEHPQGEILSRI----LFVRNVDSSIEDCELGVLFKQFGDV---RA 239
Query: 258 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 407
+ G+++GF V + A KA ++GR++ + L + + KE+ K
Sbjct: 240 LHTAGKNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIRYSIPKENPK 289
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 338
N++V+ L E L+ F +G IT V+++ GR+KGFGFV F + + A A+
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223
Query: 339 MNGRI 353
R+
Sbjct: 224 PEKRM 228
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 41.1 bits (92), Expect = 6e-04
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Frame = +3
Query: 30 LNGKELVEGKPLYVGRAQKKAERQKE------LKRKFEQLKSE-RLTRYQGVN-----LY 173
L + GKP+ V +A +K E ++ L+RK +Q+ R GV ++
Sbjct: 64 LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIF 123
Query: 174 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG---RSKGFGFVCFSSPEEATKAVTEMN 344
V L +E + F FG T VM DG R +GFGFV + S E++ + V + N
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVM-HDGVTNRPRGFGFVTYDS-EDSVEVVMQSN 181
Query: 345 GRIVGTKPLYVALAQRKE 398
+ K + V A KE
Sbjct: 182 FHELSDKRVEVKRAIPKE 199
Score = 40.7 bits (91), Expect = 9e-04
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +3
Query: 153 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATK 326
Y L+V + +E L++ F+ +G + A V E G+ +GFGFV F++ + K
Sbjct: 3 YDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK 62
Query: 327 AVTEMNGRIVGTKPLYVALAQRKED 401
A+ + + I+G KP+ V A RK +
Sbjct: 63 ALRDTH-FILG-KPVDVRKAIRKHE 85
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 335
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 336 EMNGRIVGTKPLYVAL 383
+ N + KP+ + +
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 335
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 336 EMNGRIVGTKPLYVAL 383
+ N + KP+ + +
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 335
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 336 EMNGRIVGTKPLYVAL 383
+ N + KP+ + +
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
L ++NL LR F FG + + G +GFGFV + E+A +A+ M
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 342 NGRIVGTKPLYVALAQRKEDRK 407
N +++G + + + A+ E+RK
Sbjct: 109 NHKVIGGREIAIVFAE--ENRK 128
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
+YV NLD + + L EF FG + S V R G+ F+ F P +A A+ ++G
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVA---RRPPGYAFLDFEDPRDARDAIRALDG 60
Query: 348 R 350
+
Sbjct: 61 K 61
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 267 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 410
DG+S+ FGF+ F S +EA +A+ N +GT + V +A + D A
Sbjct: 5 DGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENA 52
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKA 329
L+VKN+ LR+ F+PFG I S ++ ++ G+ G+ FV F + +EA A
Sbjct: 671 LHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNA 725
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
++V + T+ ++ L+ FA +G + +V+ E RS+GFGFV F S E + +++
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 342 N 344
N
Sbjct: 171 N 171
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 338
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P K + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 339 --MNGRIVGTK 365
+NG+ V K
Sbjct: 81 HVINGKQVEIK 91
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
++V + T+ ++ L+ FA +G + +V+ E RS+GFGFV F S E + +++
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 342 N 344
N
Sbjct: 171 N 171
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 338
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P K + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 339 --MNGRIVGTK 365
+NG+ V K
Sbjct: 81 HVINGKQVEIK 91
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 311
L++ + D+ LR+ F+ FG + VM E GR +GFGFV FS P
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 329
++V L + + R F +G ++ A +M++ R +GFGFV F S + K
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKT 171
Query: 330 VTEMNGRIVGTK 365
++NG+ V K
Sbjct: 172 FHDLNGKQVEVK 183
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 341
L+V L+ +DE L F+ FGT+ SA V+ + G S + F+ F + E +A +M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 342 NGRIVGTKPLYVALAQ 389
+ ++ + ++V +Q
Sbjct: 305 DNALIDDRRIHVDFSQ 320
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/90 (28%), Positives = 44/90 (48%)
Frame = +3
Query: 120 FEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVC 299
F QL + QG +L + NL+ T+ LR F +G + K + E + FV
Sbjct: 170 FPQLNAVPEGNNQG-SLVIMNLEPTVSSSTLRHIFQVYGEV---KQVRETPCKREQRFVE 225
Query: 300 FSSPEEATKAVTEMNGRIVGTKPLYVALAQ 389
F +A KA+ MNG+++ KP+ + ++
Sbjct: 226 FFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 332
G LYV L + D+ L FA G + S +++E S+GF FV SS ++A + +
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 333 TEMNGRIV 356
+N ++
Sbjct: 131 KYLNQSVL 138
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 332
G LYV L + D+ L FA G + S +++E S+GF FV SS ++A + +
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 333 TEMNGRIV 356
+N ++
Sbjct: 130 KYLNQSVL 137
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/112 (21%), Positives = 52/112 (46%)
Frame = +3
Query: 42 ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 221
+L +G + R + + ++ + ++ + + + R +YV ++D + +E L
Sbjct: 132 KLADGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRR---TVYVSDIDQQVTEENLAGV 188
Query: 222 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 377
F G + +V + F F+ F++ EE +A M+G ++G PL V
Sbjct: 189 FINCGQVVDCRVCGDPNSVLRFAFIEFTN-EEGARAALSMSGTVLGFYPLKV 239
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
+YV NLD + + L EF FG I S V R G+ F+ F +A A+ E++G
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVA---RRPPGYAFLDFEDSRDARDAIREVDG 60
Query: 348 R 350
+
Sbjct: 61 K 61
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 204 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 204 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 204 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 344
L+V +L+ ++ + + F FG + +M ++ R S+G GFV +SS E A A+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 345 GRIV---GTKPLYVALAQRKEDR 404
G +PL V A+ K +
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 344
L+V +L+ ++ + + F FG + +M ++ R S+G GFV +SS E A A+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 345 GRIV---GTKPLYVALAQRKEDR 404
G +PL V A+ K +
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPK 295
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
L+ NL I+ + F G + + +DG +GFG V F+S EEA KA+ E
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-EF 357
Query: 342 NGRIVGTKPLYVALAQRKEDR 404
+GR + + + + +AQ + +R
Sbjct: 358 HGRPLLGREIRLDIAQERGER 378
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 344
L+V NL + F G + S ++M+ +G+ G+GFV F+S +E KA+ N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 345 GRIVGTKPLYVALAQ 389
G + +++ +A+
Sbjct: 306 GEYLHDHKIFIDVAK 320
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 344
L+V NL + K F + ++++ G G GFV F+S EA KA+ +MN
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 345 GRIVGTKPLYVALAQ 389
G + ++ +++ + +
Sbjct: 551 GENLRSREIFLDVVE 565
Score = 33.9 bits (74), Expect = 0.098
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 344
L+V NL + F G + ++++ G+ G GFV F+S EA +A+ + N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 345 GRIVGTKPLYVALAQRK 395
G + +++ +A +K
Sbjct: 189 GECLDNNKIFLDVANKK 205
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSSPEEATKA 329
+G ++YV++L + + L EF FG IT+ + + + R G +GFV F + A +A
Sbjct: 317 EGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRA 376
Query: 330 VTEMNGRIVGTK 365
+ +I G +
Sbjct: 377 IEASPVKIGGLR 388
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 147 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEA 320
++ Q L ++NL ++ F+ G + + E G KGF FV F+ ++A
Sbjct: 326 SKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDA 385
Query: 321 TKAVTEMNGRIVGTKPLYVALAQRK 395
A+ + NG + G +P+ V A K
Sbjct: 386 ANAIKKFNGHMFGKRPIAVDWAVPK 410
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
+L V N+ + L FA +G + + + G S+GF FV + +EA KAV
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 339 MNGRIVGTKPLYVALAQ 389
++GR+V + + V A+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 338
+L V N+ + L FA +G + + + G S+GF FV + +EA KAV
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 339 MNGRIVGTKPLYVALAQ 389
++GR+V + + V A+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF--SSPEEATKAV 332
GV L+V L +++ + L K F+P GT+ + + + GRS F ++ F SS TK
Sbjct: 9 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRS--FAYIDFSPSSTNSLTKLF 66
Query: 333 TEMNG 347
+ NG
Sbjct: 67 STYNG 71
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 335
G LY+ NLD + +E +++ F+ G + + + GRSKG V FS +A AV
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 336 EMN 344
N
Sbjct: 167 RYN 169
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 332
++V NL + LR+ F FG + A V+ E GRSKG+GF+ F +A+
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 338
N++V+ E L+ F +G I V+++ GR KG+GFV F + + A +A+
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
Query: 339 MNGRI 353
R+
Sbjct: 469 PEKRM 473
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
LY+ + + + F+ FGT+ +V + G+SK FGF+ F PE A A M
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 342 N 344
N
Sbjct: 122 N 122
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 156 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCF 302
+G NL++ N+ D+ L F FG + SAKV ++ G SK FG + F
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
Score = 35.9 bits (79), Expect = 0.024
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 344
L+V L + + ++ F+ +GTI +++ SKG F+ + + E+A A+ +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 345 G--RIVG-TKPLYVALAQRKEDR 404
G ++ G T PL V A + +R
Sbjct: 168 GKHKMEGSTVPLVVKWADTERER 190
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAV 332
G +LYV L + + L FA G +T ++L+ S+GFGF+ S +A + +
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 333 TEMNGRIV 356
++ ++
Sbjct: 104 RSLDHSVL 111
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 36.3 bits (80), Expect = 0.018
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
LYV+NL I E + F +G I ++ D +KG FV + +A AV ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGC-DKATKGTAFVVYEDIYDAKNAVDHLSG 79
Query: 348 RIVGTKPLYVALAQRKEDRK 407
V + L V Q + K
Sbjct: 80 FNVANRYLIVLYYQHAKMSK 99
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 36.3 bits (80), Expect = 0.018
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = +3
Query: 81 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 260
++ AER +++ + + E L + ++V L + L F +G I K +
Sbjct: 104 KEAAERHRDVANRIRIVADEDLVHRK---IFVHGLGWDTKADSLIDAFKQYGEIEDCKCV 160
Query: 261 LE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 386
++ G+SKG+GF+ F S A A+ + +I GT+ LA
Sbjct: 161 VDKVSGQSKGYGFILFKSRSGARNALKQPQKKI-GTRMTACQLA 203
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 35.5 bits (78), Expect = 0.032
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 510 SLPPAPRYYGPAQMT--QIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 665
++PP P P Q T Q +PT P+ PP+ PSTQ S +QPT P+
Sbjct: 52 TMPPVPSLPTPGQQTLPQPQPTLPQPTGLPPM-PSTQIPSLPNQVQPTIPNIPQ 104
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 35.5 bits (78), Expect = 0.032
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +3
Query: 480 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 659
P S F P PPAP + AQ W QP RP Q++ Y PTY PA
Sbjct: 208 PPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY----PTYSPA 259
Query: 660 P 662
P
Sbjct: 260 P 260
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 35.5 bits (78), Expect = 0.032
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +3
Query: 480 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 659
P S F P PPAP + AQ W QP RP Q++ Y PTY PA
Sbjct: 266 PPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY----PTYSPA 317
Query: 660 P 662
P
Sbjct: 318 P 318
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 332
++YV N+D E ++ F GT+ ++++ G+ KGF +V F E +A+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 333 -TEMNGRIVGTKP 368
+E++GR + P
Sbjct: 150 ESELHGRQLKVSP 162
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 332
++YV N+D E ++ F GT+ ++++ G+ KGF +V F E +A+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 333 -TEMNGRIVGTKP 368
+E++GR + P
Sbjct: 150 ESELHGRQLKVSP 162
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 35.1 bits (77), Expect = 0.043
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Frame = +3
Query: 81 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI---DDERLRKEFAPFGTITSA 251
Q + E + + K E+ ++ + Q ++V NL I + E ++F P +
Sbjct: 138 QFRDEFRSDTKPPEEETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILI 197
Query: 252 KVMLEDGRSKGFGFVCFSSPEEATKAV----TEMNGRIVGTK 365
K E ++ GFGF+ +++ + A KAV E +GRI+ K
Sbjct: 198 KGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 35.1 bits (77), Expect = 0.043
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +3
Query: 183 LDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG-------FVCFSSPEEATKAVTEM 341
+DD ++DE + E +GT+T +V++ + F FV FS PEE TKA+ ++
Sbjct: 296 VDDELEDE-VGGECGKYGTVT--RVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDL 352
Query: 342 NGRIVGTKPLYVALAQRKEDRKAHL 416
+GR G + + ++ K L
Sbjct: 353 DGRYFGGRTVRATFYDEEKFSKNEL 377
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 34.7 bits (76), Expect = 0.056
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 168 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 344
L+V N D E + K F P+G +T+ ++ + F FV F + E+ATKA+
Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------RNFSFVQFETQEDATKALEATQ 148
Query: 345 GRIVGTKPLYVALAQRKEDRK 407
+ + + V A + +D +
Sbjct: 149 RSKILDRVVSVEYALKDDDER 169
>At2g15500.1 68415.m01774 hypothetical protein
Length = 132
Score = 34.3 bits (75), Expect = 0.074
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 51 EGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 167
+ K V RAQKK+ER+ ELK +EQ E ++Q N
Sbjct: 39 DDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 34.3 bits (75), Expect = 0.074
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
+YV ++D ++ +E L F+ G + ++ + F FV FS + A A++ + G
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS-LGG 188
Query: 348 RIVGTKPLYV 377
++G P+ V
Sbjct: 189 TMIGYYPVRV 198
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 33.9 bits (74), Expect = 0.098
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
L+V+N++ +++D L F PFG I S + +S+GF + + A A+ +
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISYYDIRAAHAAMRALQN 243
Query: 348 RIVGTKPLYVALAQRKED 401
++ + L + + KE+
Sbjct: 244 TLLRKRTLDIHFSIPKEN 261
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 33.9 bits (74), Expect = 0.098
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
L+V+N++ +++D L F PFG I S + +S+GF + + A A+ +
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISYYDIRAAHAAMRALQN 256
Query: 348 RIVGTKPLYVALAQRKED 401
++ + L + + KE+
Sbjct: 257 TLLRKRTLDIHFSIPKEN 274
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.9 bits (74), Expect = 0.098
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 341
++V L E L F +G I V+++ G++KGFGFV F + + A +A+ E
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 342 NGRIV 356
RI+
Sbjct: 166 KKRIL 170
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.9 bits (74), Expect = 0.098
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 341
++V L E L F +G I V+++ G++KGFGFV F + + A +A+ E
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 342 NGRIV 356
RI+
Sbjct: 166 KKRIL 170
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 33.9 bits (74), Expect = 0.098
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Frame = +3
Query: 162 VNLYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEAT 323
V LY+KNL D + D+ + F + AK ++++GR +G F+ F S E A
Sbjct: 352 VVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEVAH 411
Query: 324 KAVTEMNGRIVGTKPLYV 377
+A+ +NG + KP+ +
Sbjct: 412 RALNLVNGFVFKGKPMII 429
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 342 NGRIVGTKPLYVALAQR 392
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 342 NGRIVGTKPLYVALAQR 392
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 342 NGRIVGTKPLYVALAQR 392
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
+YV +LD + +E+L F G + ++ + F F+ F+ E A A+ ++G
Sbjct: 175 VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTAL-NLSG 233
Query: 348 RIVGTKPLYV 377
++G P+ V
Sbjct: 234 TMLGFYPVKV 243
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
+YV ++D + +E+L F FG + ++ + F F+ F+ E + ++G
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTD-EVGARTALNLSG 210
Query: 348 RIVGTKPLYV 377
++G P+ V
Sbjct: 211 TMLGFYPVKV 220
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 341
+YV + + + L F+ +G I ++ + G +SKGF F+ + AV +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 342 NGRIV 356
NG +V
Sbjct: 98 NGALV 102
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 33.1 bits (72), Expect = 0.17
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +3
Query: 168 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 344
L+V N D ER + + F P+G + + ++ + F FV F++ E+ATKA+ +
Sbjct: 71 LFVINFDPIRTRERDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTH 124
Query: 345 GRIVGTKPLYVALAQR----KEDRKA 410
+ K + V A R +EDR A
Sbjct: 125 NSKLLDKVVSVEYALREAGEREDRYA 150
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 33.1 bits (72), Expect = 0.17
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +3
Query: 168 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 344
L+V N D ER + + F P+G + + ++ + F FV F++ E+ATKA+ +
Sbjct: 97 LFVINFDPIRTRERDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTH 150
Query: 345 GRIVGTKPLYVALAQR----KEDRKA 410
+ K + V A R +EDR A
Sbjct: 151 NSKLLDKVVSVEYALREAGEREDRYA 176
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
PP P Y P + ++P TP ++ PPV+P P +P P
Sbjct: 461 PPTPTYSPPIKPPPVKPPTPTYS--PPVQPPPVQKPPTPTYSPPVKPPP 507
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
PP P Y P ++ ++P TP ++ PPV+P P +P P
Sbjct: 411 PPTPTYSPPIKLPPVKPPTPIYS--PPVKPPPVHKPPTPIYSPPVKPPP 457
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
PP P Y P + ++P TP ++ PP++P P +P P
Sbjct: 511 PPTPTYSPPIKPPPVKPPTPTYS--PPIKPPPVHKPPTPTYSPPIKPPP 557
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 507 PSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
P PP P Y P Q + +P TP ++ PPV+P P +P P
Sbjct: 474 PVKPPTPTYSPPVQPPPVQKPPTPTYS--PPVKPPPIQKPPTPTYSPPIKPPP 524
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
PP P Y P + ++P TP ++ PPV+P P +P P
Sbjct: 327 PPTPTYSPPIKPPPVKPPTPIYS--PPVKPPPVHKPPTPIYSPPVKPPP 373
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
PP P Y P + +P TP ++ PP++P P +P P
Sbjct: 175 PPTPTYSPPIKPPVHKPPTPIYS--PPIKPPPVHKPPTPIYSPPIKPPP 221
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 332
++YV N+D E +++ F GT+ ++ + G+ KGF +V F E ++
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILN 163
Query: 333 -TEMNGR 350
+E++GR
Sbjct: 164 ESELHGR 170
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/74 (22%), Positives = 39/74 (52%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
+YV ++D+ + +E+L F G + ++ + F F+ F+ E A A+ + +G
Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALRK-SG 197
Query: 348 RIVGTKPLYVALAQ 389
+ G+ P+ V +++
Sbjct: 198 TMFGSHPIRVFMSK 211
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 344
+YV NLD + + L EF FG + + V R G+ F+ F +A A++ ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 344
+YV NLD + + L EF FG + + V R G+ F+ F +A A++ ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEFDDERDALDAISALD 59
>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 427
Score = 32.7 bits (71), Expect = 0.23
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 575 WSCRSYLSHLSWSIVTWCW 519
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 492
Score = 32.7 bits (71), Expect = 0.23
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 575 WSCRSYLSHLSWSIVTWCW 519
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 32.3 bits (70), Expect = 0.30
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 332
G L+V +L D L E +G + K E G+SKG+ V F P A+
Sbjct: 233 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACK 292
Query: 333 TEMNGRIVGTKPLYVALA 386
+NG +P V A
Sbjct: 293 DALNGYPFNGRPCVVEYA 310
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMN 344
L +N+ T E +R F +G++ ++ M + R++G F+ +SPEEA A+ +
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLE 155
Query: 345 GRIVGTKPLYVALAQRKEDR 404
+ L V A+ K+ +
Sbjct: 156 SCEYEGRRLKVDYAKTKKKK 175
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 341
L+V L ++ LR+ + +G I + +++ + G S+G+GFV + + +E +A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 342 NGRIVGTKPLYV 377
+ ++ + + V
Sbjct: 126 HHSLIDGREIIV 137
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 126 QLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCF 302
Q K E + + V NL ++ F + S ++++ +G+ G+GFV F
Sbjct: 146 QSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEF 205
Query: 303 SSPEEATKAVTEMNG 347
+S A KA+ E NG
Sbjct: 206 ASAYGANKALEEKNG 220
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 222 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 353
F+ G I +++++ G G GFV F+S EA KA+ + G+I
Sbjct: 396 FSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
gi:3928758 contains Pfam profile PF04055: radical SAM
domain protein
Length = 374
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 180 NLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS 278
N ++D R+ KE+AP GT+T VML G +
Sbjct: 251 NFKQSLDVLRMAKEYAPAGTLTKTSVMLGCGET 283
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 341
L+V +L +++ L++ F FG + ++ ++ + +G G+V F + +A KA M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 342 NGRIVGTK 365
+G + K
Sbjct: 160 DGAQIDGK 167
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 341
L+V +L +++ L++ F FG + ++ ++ + +G G+V F + +A KA M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 342 NGRIVGTK 365
+G + K
Sbjct: 160 DGAQIDGK 167
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 204 ERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 365
E + F +G I A ++ + RSKG+GFV F + AT+A + I G +
Sbjct: 31 EAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.5 bits (68), Expect = 0.52
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
++V L + ++R+ FG + ++ E G SKG+ F + P A +
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 342 NGRIVGTKPLYVALA 386
NG +G K L V A
Sbjct: 437 NGIKMGDKTLTVRRA 451
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 222 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 389
F G + S ++++ + + G+GFV F+SP A A+ + NG + +++ +A+
Sbjct: 702 FNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAK 758
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 150 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKA 329
R G ++Y+K L L EF FG I + + + + FGFV F S A
Sbjct: 308 RALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQKGFCFGFVEFESASSMQSA 367
Query: 330 V 332
+
Sbjct: 368 I 368
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.1 bits (67), Expect = 0.69
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 347
+YV ++D ++ +E L F+ G + ++ + F FV F+ + A +A++ + G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS-LGG 201
Query: 348 RIVGTKPLYV 377
++G P+ V
Sbjct: 202 TMLGFYPVRV 211
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +3
Query: 510 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 644
S PP P + P T RP P + P P QAA+ Y P
Sbjct: 151 SPPPPPVLFSPPPPTVTRPPPPPTITRSPPPPRPQAAAYYKKTPP 195
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 30.7 bits (66), Expect = 0.92
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 507 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
P PP P P+ +TQI+P TP N P S+ S+ A P+ P P
Sbjct: 14 PETPPQPSDSKPSTLTQIQP-TPSTNPSPSSVVSS-IPSSPAPQSPSLNPNP 63
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFG-----TITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 332
LY+KNL I ERL+ F G I AK ED R +GFV ++ +A+
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSR---YGFVHYAERTSVMRAL 326
Query: 333 TEMNGRIVGTKPLYVALAQRKEDRKAH 413
+ L LA+ + D+K +
Sbjct: 327 KNTERYEIDGHMLDCTLAKPQADQKTN 353
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +3
Query: 474 FQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYR 653
F + +F S PP ++Y P + + P + + PPV S + + P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYK 76
Query: 654 PAP 662
P
Sbjct: 77 SPP 79
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 510 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
S PP ++Y P + + P + + PPV S Y + P Y+ P
Sbjct: 45 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPP 95
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +3
Query: 474 FQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYR 653
F + +F S PP ++Y P + + P + + PPV S + + P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYK 76
Query: 654 PAP 662
P
Sbjct: 77 SPP 79
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 510 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
S PP ++Y P + + P + + PPV S Y + P Y+ P
Sbjct: 45 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPP 95
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR 275
LYV L+ I ++ + F +G + S +VM EDG+
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAEDGK 262
>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 371
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 518 SSTTLLWTSSNDSNKTYNSKVECTAPCKA*HTSSICICKYATHLQTSTE 664
SS++ L +S+D N T ++ C P S++ CK+ HLQ E
Sbjct: 27 SSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIE 75
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 153 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 332
+Q NL+V +L + L + F +G I V S+GF F+ + EEA A
Sbjct: 15 FQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVY----SSRGFAFIYYRHVEEAVAAK 70
Query: 333 TEMNG-RIVGTKPL 371
+ G + GT L
Sbjct: 71 EALQGANLNGTNEL 84
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = +3
Query: 507 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
P PP P Y P P P ++ PP P Y+ P+ P P
Sbjct: 440 PPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPP 491
>At2g38250.1 68415.m04697 DNA-binding protein-related contains
similarity to DNA-binding protein GI:170271 from
[Nicotiana tabacum]
Length = 289
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +3
Query: 75 RAQKKAERQKELKRKFEQLKSERL 146
R +++AE+++E +RK E+L+ ERL
Sbjct: 225 REKERAEKEEEWRRKMEELEKERL 248
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 644
PP+P YY P + P+TP PP P+ Y + P
Sbjct: 735 PPSPVYYPPVTQSPPPPSTP-VEYHPPASPNQSPPPEYQSPPP 776
>At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) /
cyclin-dependent kinase inhibitor 7 (ICK7) identical to
cyclin-dependent kinase inhibitor 7 (krp7) [Arabidopsis
thaliana] GI:14422297
Length = 195
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 126 QLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 305
+ K +R + Y+G N+ LDD DD+ LR + +S+ + S GF V S
Sbjct: 3 ETKPKRDSEYEGSNIKRMRLDD--DDDVLRSPTRTLSSSSSSSLAYSVSDSGGFCSVALS 60
Query: 306 SPEE 317
E+
Sbjct: 61 EEED 64
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 159 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSS 308
G ++YV+NL +L + F FG I + + + +G FGFV F +
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFET 343
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML---EDGRSKGFGFVCF---SSPEEATK 326
++YV+NL I + +EF FGTI V L +D + FV F +S E A K
Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317
Query: 327 A 329
A
Sbjct: 318 A 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +3
Query: 165 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML---EDGRSKGFGFVCF---SSPEEATK 326
++YV+NL I + +EF FGTI V L +D + FV F +S E A K
Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376
Query: 327 A 329
A
Sbjct: 377 A 377
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 273 RSKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 404
+S+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 53
>At4g12440.2 68417.m01969 adenine phosphoribosyltransferase,
putative strong similarity to SP|P31166 Adenine
phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT)
{Arabidopsis thaliana}; contains Pfam profile PF00156:
Phosphoribosyl transferase domain
Length = 182
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 4/24 (16%)
Frame = +3
Query: 12 EXACI----ELNGKELVEGKPLYV 71
E AC+ EL G+E +EGKPLYV
Sbjct: 154 ECACVIELPELKGRERLEGKPLYV 177
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 477 QPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 656
QP+G PS PP P++ A Q +T R+N Q P + + S + + P +P
Sbjct: 384 QPTGRFDPQFPSQPPRPQFPNQAPNQQ---STGRFNPQFPNQRPSPPQSRFPDQAPNQQP 440
Query: 657 A 659
+
Sbjct: 441 S 441
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 28.7 bits (61), Expect = 3.7
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Frame = +3
Query: 75 RAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL---RKEFAPFGTIT 245
R + + + K + + +QL S R+ + V Y+ L + DE L ++ F +G +
Sbjct: 41 RKKIQKSKSKSSEGRKQQLTSVRVIQRNLV--YIVGLPLNLADEDLLQHKEYFGQYGKVL 98
Query: 246 ------SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 395
+A V L D ++ + EEA + + ++G I+ KPL K
Sbjct: 99 KVSMSRTASVKLSDNDFLHRRYITYGKEEEAVRCIQAVHGFILDGKPLKACFGTTK 154
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +3
Query: 12 EXACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDD 191
E I L+G+E V +PL V ++ K+ E++ K E+ +++ +R + NL+V + ++
Sbjct: 428 ESVPIALDGEEQVMDRPLGV-KSSKQKEKKVATKTMLEEREADSRSRLE--NLWVLDEEE 484
Query: 192 TIDDERLR-KEFAPFGTITSAKVMLEDGRSKGF 287
+ D L K + K M+E+ + F
Sbjct: 485 QVMDLPLGVKSSKQKERKVATKTMIEEREAANF 517
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Frame = +3
Query: 471 IFQPSGASGFFVPSLP---PAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQ 641
+F P S + P P P P Y P T P T N QPP+ T + + +
Sbjct: 606 VFSPPPPSPVYSPPPPSHSPPPPVYSPPPPTFSPPPTHNTN-QPPMGAPTPTQAPTPSSE 664
Query: 642 PTYRPAP 662
T P P
Sbjct: 665 TTQVPTP 671
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +3
Query: 501 FVPSLPPAPRYYGPAQMTQIRPTTPR--WNAQPPVRPSTQAASAYANMQPTY 650
+V S PP P YY P+ + + P +++ PP S Y + P Y
Sbjct: 738 YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPPPY 789
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +3
Query: 501 FVPSLPPAPRYYGPAQMTQIRPTTPRW---NAQPPVRPSTQAASAYANMQPTY 650
+V S PP P YY P+ + + P + + PP S Y + P Y
Sbjct: 815 YVYSSPPPPTYYSPSPKVEYKSPPPPYVYNSPPPPAYYSPSPKIEYKSPPPPY 867
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +3
Query: 501 FVPSLPPAPRYYGPAQMTQIRPTTPRW---NAQPPVRPSTQAASAYANMQPTY 650
+V S PP P YY P+ + + P + + PP S Y + P Y
Sbjct: 789 YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPTYYSPSPKVEYKSPPPPY 841
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
PPAP P P P PP++PS A S AN P P+P
Sbjct: 155 PPAPPASDPTNSPPASPLDP--TNPPPIQPSGPATSPPAN--PNAPPSP 199
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 39 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 167
K+ ++ Y QK+ + K+K E + ER+T+ QG N
Sbjct: 508 KQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERITKLQGEN 550
>At5g07820.1 68418.m00896 expressed protein
Length = 561
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 504 VPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 665
+PSLPP + IR TT R P + + +A+ N +P + P+
Sbjct: 354 LPSLPPPSEVVTGSDPRPIRQTTSRSKTSLPEKKQSGSANLVTNPKPESKIRPK 407
>At4g35870.1 68417.m05094 expressed protein
Length = 817
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 198 DDERLRKEFAPFGTITSAKVMLEDGRSKGFG--FVCFSSPEEATKAVTE 338
DDE+LRK + S ++GR++G G FV F A KAV +
Sbjct: 311 DDEKLRKLQELRADLESQLAAYKEGRAQGAGVAFVMFKDVYTANKAVQD 359
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 174 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 332
VKNL + F FG I V + + RS +GFV F A +A+
Sbjct: 1080 VKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFKEENAAQRAI 1132
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 27.9 bits (59), Expect = 6.5
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Frame = +3
Query: 51 EGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP 230
EG Y RA KR E+ K E Y V L ++ L +++ ++ + F+
Sbjct: 168 EGAYEYEVRASPPPTGPSRAKRFSEKEKLE----YTEV-LKMRGLPYSVNKPQIIEFFSG 222
Query: 231 FGTITSAK--VMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 404
+ I V DG++ G FV F + EEA +A+ + + +G++ + + R+E R
Sbjct: 223 YKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAK-DKMSIGSRYVELFPTTREEAR 281
Query: 405 KA 410
+A
Sbjct: 282 RA 283
>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 689
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIR-PTTPR-WNAQPPVRPSTQAASAYANMQPTY 650
PP P YY P+ + P P +N+ PP S Y + P Y
Sbjct: 86 PPPPSYYSPSPKVNYKSPPPPNVYNSPPPPYYSPSPKVDYKSPPPPY 132
>At4g27370.1 68417.m03929 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1126
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 39 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 179
K LVE K + ++ AE + LK +FE+ K + TR + V+
Sbjct: 1063 KSLVEVKSDSISNRKQHAEELRRLKSRFEKWKKDYKTRLRETKARVR 1109
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +3
Query: 480 PSGASGFFVPSLPP-APRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 656
PS S P PP +P P PTTP PP P+T PT P
Sbjct: 456 PSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPT-TP 514
Query: 657 AP 662
+P
Sbjct: 515 SP 516
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +3
Query: 501 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRP--STQAASAYANMQPTY 650
+V S PP P YY P+ + P P + PP P S Y + P Y
Sbjct: 206 YVYSFPPPPPYYSPSPKVGYKSPPAPYVYSSPPPPPYYSPSPKVNYKSPPPPY 258
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +3
Query: 501 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRP--STQAASAYANMQPTY 650
++ S PP P YY P+ + P P + PP P S Y + P Y
Sbjct: 154 YIYSSPPPPPYYSPSPKVDYKSPPPPYVYSSPPPPPYYSPSPKVEYKSPPPPY 206
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 45 LVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 143
L E P Y R + ER+K +K K +Q ++ER
Sbjct: 554 LDEKYPAYKDRHKLAVEREKHIKHKADQARAER 586
>At3g25240.1 68416.m03153 hypothetical protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 281
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 596 RGLCIPPWSCRSYLSH 549
RGL +PPW SYL H
Sbjct: 222 RGLSLPPWRRSSYLQH 237
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Frame = +3
Query: 480 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPST 611
P GAS + S PP+PR P T RP +PR A PP RP+T
Sbjct: 203 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTT 252
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Frame = +3
Query: 480 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPST 611
P GAS + S PP+PR P T RP +PR A PP RP+T
Sbjct: 202 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTT 251
>At2g31090.1 68415.m03797 expressed protein
Length = 75
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 656 WSVSGLHICICRCCLC 609
W V L CIC CCLC
Sbjct: 32 WIVGLLLSCICPCCLC 47
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 617
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 617
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 617
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 516 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 617
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 507 PSLPPA-PRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 662
P+ PP+ P + P Q + PT QPP +P TQ + + PT P P
Sbjct: 24 PTRPPSQPPSHPPIQPSSQPPT------QPPSQPPTQPPTQPPSHPPTQPPTP 70
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 342 NGRIVGTKPLYVALAQR 392
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 342 NGRIVGTKPLYVALAQR 392
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 341
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 342 NGRIVGTKPLYVALAQR 392
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 507 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 665
P PP P Y P T ++P P PP P+ +A P Y P P+
Sbjct: 127 PYTPPPPTPYTPPPPT-VKPPPPPVVTPPPPTPTPEAPCPPPPPTP-YPPPPK 177
>At4g08400.1 68417.m01388 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 513
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 501 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTY 650
+V S PP P YY P+ + P P + + PP S Y + P Y
Sbjct: 237 YVYSSPPPP-YYSPSPKVNYKSPPPPYYRSPPPPYYSPSPKVDYKSPPPPY 286
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 507 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQ-PTYRPAPR 665
P PP P P + ++P TP+ P V+P + + + + PT +P P+
Sbjct: 43 PVKPPKPPAVKPPKPPAVKPPTPK---PPTVKPHPKPPTVKPHPKPPTVKPHPK 93
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 75 RAQKKAERQKELKR---KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP 230
+ +KKA+R KE K+ K +Q K + Q + + DDT++++ +E P
Sbjct: 133 KKEKKAKRNKEKKKEKKKKKQKKINEAAKNQDASAVSCDGDDTVEEQVEEEEIPP 187
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 507 PSLPPAPRYYGPAQM-TQIRPTTPRWNAQPPVRPSTQAASAYANMQ 641
P +PP P Y PAQ+ + + PT PP RP Q + AN Q
Sbjct: 50 PLVPPGPPYAPPAQIPSSLLPT--NLPPPPPFRPGMQ-FTPVANFQ 92
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +3
Query: 42 ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 221
E+++ K + + + +KE +F+ L+ ERL + + L V+ + + +DD RL++E
Sbjct: 559 EILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKKEESA-LRVQIMQE-LDDIRLQRE 616
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 27.5 bits (58), Expect = 8.5
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +3
Query: 168 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 341
L+V L D + + +G + K E G+SKG+ V F A M
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 342 NGRIVGTKPLYVALA 386
NG I K VA A
Sbjct: 264 NGFIFNGKACVVAFA 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,976
Number of Sequences: 28952
Number of extensions: 276817
Number of successful extensions: 1673
Number of sequences better than 10.0: 246
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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