Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0703
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 169 1e-42
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 169 2e-42
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 161 4e-40
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 157 6e-39
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 151 7e-37
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 138 5e-33
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 132 3e-31
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 110 9e-25
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 62 4e-10
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 61 9e-10
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 60 2e-09
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 60 2e-09
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 58 5e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 58 6e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 58 6e-09
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 58 8e-09
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 58 8e-09
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 58 8e-09
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 58 8e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 57 1e-08
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 57 1e-08
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 57 1e-08
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 56 2e-08
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 56 2e-08
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 56 2e-08
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 56 3e-08
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 55 5e-08
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 55 5e-08
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 55 5e-08
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 55 6e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 54 8e-08
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 54 8e-08
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 54 1e-07
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 54 1e-07
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 53 2e-07
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 53 2e-07
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 53 2e-07
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 52 3e-07
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 52 3e-07
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 52 4e-07
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 52 4e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 52 6e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 52 6e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 51 7e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 51 7e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 51 7e-07
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 51 7e-07
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 51 1e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 51 1e-06
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 50 1e-06
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 50 1e-06
At5g51300.2 68418.m06360 splicing factor-related contains simila... 50 2e-06
At5g51300.1 68418.m06359 splicing factor-related contains simila... 50 2e-06
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 50 2e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 50 2e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 50 2e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 49 3e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 49 4e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 49 4e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 49 4e-06
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 49 4e-06
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 48 5e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 48 5e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 48 7e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 48 7e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 48 9e-06
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 48 9e-06
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 47 1e-05
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 47 2e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 47 2e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 47 2e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 47 2e-05
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 46 3e-05
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 46 4e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 46 4e-05
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 45 5e-05
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 45 5e-05
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 44 1e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 44 1e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 1e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 43 2e-04
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 43 2e-04
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 43 2e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 43 2e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 43 3e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 43 3e-04
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 43 3e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 43 3e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 43 3e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 43 3e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 3e-04
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 42 4e-04
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 42 4e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 42 6e-04
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 41 8e-04
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 41 8e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 41 8e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 8e-04
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 40 0.001
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 40 0.001
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 40 0.001
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 0.001
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 40 0.001
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 0.001
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 40 0.001
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 40 0.001
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 40 0.001
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 40 0.001
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 40 0.002
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 40 0.002
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 40 0.002
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 40 0.002
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 40 0.002
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 40 0.002
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 39 0.003
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 39 0.003
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 39 0.003
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 39 0.004
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 39 0.004
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 39 0.004
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 38 0.006
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 38 0.006
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.007
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.007
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 37 0.013
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 37 0.013
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 37 0.013
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.013
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 37 0.017
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 37 0.017
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 37 0.017
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 36 0.022
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 36 0.022
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 36 0.039
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 36 0.039
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 36 0.039
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 35 0.052
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 35 0.052
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 35 0.052
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 35 0.052
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 35 0.068
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 34 0.090
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 34 0.090
At2g15500.1 68415.m01774 hypothetical protein 34 0.090
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 34 0.090
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 34 0.12
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 34 0.12
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 34 0.12
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 34 0.12
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 34 0.12
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.16
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.16
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.16
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 33 0.16
At4g10610.1 68417.m01735 RNA-binding protein, putative 33 0.21
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.21
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 33 0.21
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 33 0.21
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.28
At5g24440.1 68418.m02880 RNA-binding protein, putative 33 0.28
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.28
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.28
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c... 33 0.28
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c... 33 0.28
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 32 0.36
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 32 0.36
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 32 0.36
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 32 0.36
At3g08670.1 68416.m01007 expressed protein 32 0.48
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t... 32 0.48
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.48
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.48
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.64
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.64
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.84
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 31 0.84
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.84
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 31 0.84
At1g23540.1 68414.m02960 protein kinase family protein contains ... 31 0.84
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 31 1.1
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 31 1.1
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 31 1.1
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 31 1.1
At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa... 30 1.5
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 30 1.5
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 30 1.5
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 30 1.5
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 26 1.7
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 30 1.9
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 1.9
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 30 1.9
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 30 1.9
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 30 1.9
At1g26150.1 68414.m03192 protein kinase family protein similar t... 30 1.9
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 2.6
At2g38250.1 68415.m04697 DNA-binding protein-related contains si... 29 2.6
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 2.6
At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) / cyclin-d... 29 2.6
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 29 2.6
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 29 3.4
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 29 3.4
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 29 3.4
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 3.4
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 29 3.4
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 29 3.4
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 29 4.5
At4g34150.1 68417.m04846 C2 domain-containing protein similar to... 29 4.5
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 29 4.5
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 29 4.5
At1g10620.1 68414.m01204 protein kinase family protein contains ... 29 4.5
At1g06760.1 68414.m00718 histone H1, putative similar to histone... 29 4.5
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 28 5.9
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 28 5.9
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 28 5.9
At5g07820.1 68418.m00896 expressed protein 28 5.9
At4g35870.1 68417.m05094 expressed protein 28 5.9
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 28 5.9
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 28 5.9
At2g40070.1 68415.m04923 expressed protein 28 5.9
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 28 5.9
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 28 5.9
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 28 7.8
At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1) domain... 28 7.8
At5g06640.1 68418.m00750 proline-rich extensin-like family prote... 28 7.8
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro... 28 7.8
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei... 28 7.8
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 28 7.8
At4g12440.2 68417.m01969 adenine phosphoribosyltransferase, puta... 28 7.8
At3g28550.1 68416.m03565 proline-rich extensin-like family prote... 28 7.8
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 7.8
At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof... 28 7.8
At2g31090.1 68415.m03797 expressed protein 28 7.8
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa... 28 7.8
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 28 7.8
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 169 bits (412), Expect = 1e-42
Identities = 78/131 (59%), Positives = 108/131 (82%), Gaps = 1/131 (0%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 188
++NG L + LYVGRAQKK+ER++EL+RKFEQ + R + QG NLY+KNLDD++DDE
Sbjct: 288 KMNGISLGDDV-LYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
Query: 189 RLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 365
+L++ F+ +G +TS+KVML G S+GFGFV +S+PEEA +A++EMNG+++G KPLY+AL
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 366 AQRKEDRKAHL 398
AQRKEDR+AHL
Sbjct: 407 AQRKEDRRAHL 417
Score = 81.4 bits (192), Expect = 6e-16
Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 188
+LNG L+ K ++VG ++ ER ++ E + R T N+YVKNL I ++
Sbjct: 195 KLNGM-LMNDKQVFVGHFIRRQERARD-----ENTPTPRFT-----NVYVKNLPKEIGED 243
Query: 189 RLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 365
LRK F FG I+SA VM + G S+ FGFV F E A AV +MNG +G LYV
Sbjct: 244 ELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGR 303
Query: 366 AQRKEDRKAHL 398
AQ+K +R+ L
Sbjct: 304 AQKKSEREEEL 314
Score = 74.1 bits (174), Expect = 9e-14
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +3
Query: 129 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEA 302
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GRSKG+GFV F E A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 303 TKAVTEMNGRIVGTKPLYVALAQRKEDR 386
A+ ++NG ++ K ++V R+++R
Sbjct: 190 QAAIDKLNGMLMNDKQVFVGHFIRRQER 217
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 119
E+NGK ++ KPLY+ AQ+K +R+ L+ F Q+++
Sbjct: 391 EMNGK-MIGRKPLYIALAQRKEDRRAHLQALFSQIRA 426
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 169 bits (411), Expect = 2e-42
Identities = 83/130 (63%), Positives = 104/130 (80%), Gaps = 1/130 (0%)
Frame = +3
Query: 12 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 191
LNGK + K +VG+AQKK+ER+ ELK+KFEQ E + QG NLYVKNLD+++ D++
Sbjct: 284 LNGKTF-DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 192 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
LR+ FAPFGTITS KVM + G S+G GFV FS+PEEAT+A+TEMNG+++ TKPLYVALA
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 369 QRKEDRKAHL 398
QRKEDRKA L
Sbjct: 403 QRKEDRKARL 412
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 323
N+YVKNL +++ DE L K F FG TS +M + +G+SKGFGFV F + ++A +AV +
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 324 NGRIVGTKPLYVALAQRKEDRKAHL 398
NG+ K +V AQ+K +R+ L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETEL 309
Score = 67.7 bits (158), Expect = 8e-12
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Frame = +3
Query: 132 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEAT 305
R GV N+++KNLD +ID + L + F+ FG I S KV ++ G+SKG+GFV + + E A
Sbjct: 128 RKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQ 187
Query: 306 KAVTEMNGRIVGTKPLYV 359
A+ ++NG ++ K +YV
Sbjct: 188 GAIDKLNGMLLNDKQVYV 205
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTE 320
+LYV +LD T+ D +L + F G + S +V + RS G+G+V +++P++A++A+ E
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 321 MNGRIVGTKPLYVALAQR 374
+N + + + V + R
Sbjct: 106 LNFMALNGRAIRVMYSVR 123
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 116
E+NGK +V KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 386 EMNGKMIVT-KPLYVALAQRKEDRKARLQAQFSQMR 420
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 161 bits (392), Expect = 4e-40
Identities = 76/131 (58%), Positives = 105/131 (80%), Gaps = 1/131 (0%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 188
++NG L E LYVGRAQKK++R++EL+RKFEQ + R + QG NLY+KNLDD+++DE
Sbjct: 284 KMNGISLGEDV-LYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDE 342
Query: 189 RLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 365
+L++ F+ +G +TS KVM+ G S+GFGFV +S+PEEA A+ EMNG+++G KPLYVAL
Sbjct: 343 KLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 402
Query: 366 AQRKEDRKAHL 398
AQRKE+R+AHL
Sbjct: 403 AQRKEERQAHL 413
Score = 82.6 bits (195), Expect = 3e-16
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +3
Query: 96 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFG 272
R+ ++ +SE N+YVKNL I D+ L+K F +G I+SA VM + G S+ FG
Sbjct: 209 RRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFG 268
Query: 273 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 398
FV F SPE A AV +MNG +G LYV AQ+K DR+ L
Sbjct: 269 FVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEEL 310
Score = 74.9 bits (176), Expect = 5e-14
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +3
Query: 129 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEA 302
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GRSKG+GFV F E A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 303 TKAVTEMNGRIVGTKPLYVALAQRKEDR 386
A+ ++NG ++ K ++V R++DR
Sbjct: 186 QAAIDKLNGMLLNDKQVFVGHFVRRQDR 213
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 119
E+NGK ++ KPLYV AQ+K ERQ L+ F Q++S
Sbjct: 387 EMNGK-MIGRKPLYVALAQRKEERQAHLQSLFTQIRS 422
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 157 bits (382), Expect = 6e-39
Identities = 78/130 (60%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
Frame = +3
Query: 12 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 191
LNGK+ + K YVG+AQKK+ER+ EL R++EQ S+ ++ G+NLYVKNLDDT+ DE+
Sbjct: 285 LNGKKF-DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEK 343
Query: 192 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
LR+ FA FGTITS KVM + G SKG GFV FS+ EA++ + EMNG++VG KPLYVALA
Sbjct: 344 LRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
Query: 369 QRKEDRKAHL 398
QRKE+R+A L
Sbjct: 404 QRKEERRAKL 413
Score = 83.4 bits (197), Expect = 1e-16
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKEL-KRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 185
+LNGK L + K ++VG +K ER+ K KF N+YVKNL + D
Sbjct: 193 KLNGKVLND-KQIFVGPFLRKEERESAADKMKF-------------TNVYVKNLSEATTD 238
Query: 186 ERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 362
+ L+ F +G+I+SA VM + DG+S+ FGFV F +PE+A +AV +NG+ K YV
Sbjct: 239 DELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVG 298
Query: 363 LAQRKEDRKAHLT 401
AQ+K +R+ L+
Sbjct: 299 KAQKKSERELELS 311
Score = 74.5 bits (175), Expect = 7e-14
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Frame = +3
Query: 132 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEAT 305
R GV NL+VKNLD ++D++ L + F+ GTI S KV + G+S+G+GFV F + + A
Sbjct: 129 RRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAK 188
Query: 306 KAVTEMNGRIVGTKPLYVALAQRKEDRKA 392
A+ ++NG+++ K ++V RKE+R++
Sbjct: 189 NAIEKLNGKVLNDKQIFVGPFLRKEERES 217
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 116
E+NGK +V GKPLYV AQ+K ER+ +L+ +F Q++
Sbjct: 387 EMNGK-MVGGKPLYVALAQRKEERRAKLQAQFSQMR 421
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 151 bits (365), Expect = 7e-37
Identities = 71/130 (54%), Positives = 103/130 (79%), Gaps = 1/130 (0%)
Frame = +3
Query: 12 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 191
LNG + + K YVGRAQKK+ER+ EL+ ++EQ E ++Q NLYVKNLD +I DE+
Sbjct: 89 LNGHKF-DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEK 147
Query: 192 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
L++ F+PFGT+TS+KVM + +G SKG GFV F++PEEAT+A+++++G+++ +KPLYVA+A
Sbjct: 148 LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 207
Query: 369 QRKEDRKAHL 398
QRKEDR+ L
Sbjct: 208 QRKEDRRVRL 217
Score = 78.2 bits (184), Expect = 6e-15
Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Frame = +3
Query: 96 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFG 272
R+ E+ + T++ N+YVKNL ++ D+ L+ F +G ITSA VM + +G+SKGFG
Sbjct: 15 RRQERDSTANKTKF--TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFG 72
Query: 273 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 398
FV F + ++A +AV +NG K YV AQ+K +R+ L
Sbjct: 73 FVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 114
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/36 (44%), Positives = 27/36 (75%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 116
+L+GK ++E KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 191 QLSGK-MIESKPLYVAIAQRKEDRRVRLQAQFSQVR 225
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 138 bits (333), Expect = 5e-33
Identities = 72/132 (54%), Positives = 99/132 (75%), Gaps = 2/132 (1%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER-LTRYQGVNLYVKNLDDTIDD 185
++NG +V+ K L+VGRAQ+K R ++LK KFE K R + +G+NLYVKNLDD++D+
Sbjct: 178 KMNGV-VVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 186 ERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 362
+L + F+ FGTITS KVM+ +G SKG GFV FS+ EEA+KA+ +MNG++VG KP+YV+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 363 LAQRKEDRKAHL 398
LAQ KE K HL
Sbjct: 297 LAQCKEQHKLHL 308
Score = 76.6 bits (180), Expect = 2e-14
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 323
N+YVKNL +T D L++ F FG ITSA VM + +G+S+ FGFV F E A A+ +M
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 324 NGRIVGTKPLYVALAQRKEDRKAHL 398
NG +V K L+V AQRK +R L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDL 204
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 323
N++VKNLD++ID+++L F+ FG + S KV + G SKG+GFV F S A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 324 NGRIVGTKPLYV 359
NG ++ + ++V
Sbjct: 92 NGTLIRNQHIHV 103
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 6 IELNGKELVEGKPLYVGRAQKKAERQKELKRKF 104
+++NGK +V KP+YV AQ K + + L+ +F
Sbjct: 281 LKMNGK-MVGNKPIYVSLAQCKEQHKLHLQTQF 312
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 132 bits (318), Expect = 3e-31
Identities = 65/121 (53%), Positives = 89/121 (73%), Gaps = 1/121 (0%)
Frame = +3
Query: 39 KPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFG 218
K LYVGRAQKKAER++ L+ +F++ E+ + N+YVKN++ + +E LRK F+ G
Sbjct: 269 KCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCG 328
Query: 219 TITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 395
TITS K+M ++ G+SKGFGFVCFS+PEEA AV +G++ KPLYVA+AQ+KEDRK
Sbjct: 329 TITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQ 388
Query: 396 L 398
L
Sbjct: 389 L 389
Score = 79.0 bits (186), Expect = 3e-15
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +3
Query: 6 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 185
I+ +V K +YVG+ KK +R K E+ T NLY+KNLD + +
Sbjct: 169 IQTLNSTIVADKEIYVGKFMKKTDRVKP---------EEKYT-----NLYMKNLDADVSE 214
Query: 186 ERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 362
+ LR++FA FG I S + ++ R +G+ FV F +PE+A +A +NG G+K LYV
Sbjct: 215 DLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVG 274
Query: 363 LAQRKEDRK 389
AQ+K +R+
Sbjct: 275 RAQKKAERE 283
Score = 69.3 bits (162), Expect = 3e-12
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +3
Query: 132 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEAT 305
R GV N++VKNL +++ + L+ F FG I S KV LEDG+S+G+GFV F + A
Sbjct: 107 RRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAH 166
Query: 306 KAVTEMNGRIVGTKPLYVALAQRKEDR 386
A+ +N IV K +YV +K DR
Sbjct: 167 AAIQTLNSTIVADKEIYVGKFMKKTDR 193
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
+LYV +L ++ + L FA F ++TS ++ + GRS +G+ F S ++A A+ +
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 321 MNGRIVGTKPLYVALAQRKEDRK 389
N ++ K + V + R D +
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDAR 107
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 24 ELVEGKPLYVGRAQKKAERQKELKRKF 104
++ GKPLYV AQKK +R+ +L+ +F
Sbjct: 367 QMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 110 bits (265), Expect = 9e-25
Identities = 60/118 (50%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
Frame = +3
Query: 39 KPLYVGRAQKKAERQKELKRKF-EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPF 215
K L+VG+A KK ER++ LK+KF + ++ R+ NLYVKNL +++++ RLR+ F +
Sbjct: 270 KKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWS--NLYVKNLSESMNETRLREIFGCY 327
Query: 216 GTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 386
G I SAKVM E+GRSKGFGFVCFS+ EE+ +A +NG +V KP+ V +A+RKEDR
Sbjct: 328 GQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
Score = 81.0 bits (191), Expect = 8e-16
Identities = 43/94 (45%), Positives = 58/94 (61%)
Frame = +3
Query: 111 LKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 290
L R TR NLYVKNLD +I L + F PFG+I S KV+ E+G+SKGFGFV F +
Sbjct: 101 LAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDT 160
Query: 291 PEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 392
+ A A + ++G +V K L+VA K++R A
Sbjct: 161 EQSAVSARSALHGSMVYGKKLFVAKFINKDERAA 194
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 323
N+YVKNL +T+ D+ L F+ +GT++S VM + GRS+GFGFV F +PE A KA+ +
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 324 NGRIVGTKPLYVALAQRKEDRKAHL 398
G +G+K L+V A +K++R+ L
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREML 287
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 12 LNGKELVEGKPLYVGRAQKKAERQKELKRKFE 107
LNG LV+GKP+ V A++K +R K L++ F+
Sbjct: 364 LNGF-LVDGKPIVVRVAERKEDRIKRLQQYFQ 394
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +3
Query: 132 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 305
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS + A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 306 KAVTEMNGRIVGTKPLYVALAQRK 377
A+ EM+G+ + + + V LA +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +3
Query: 132 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 305
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS + A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 306 KAVTEMNGRIVGTKPLYVALAQRK 377
A+ EM+G+ + + + V LA +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
L+V L D+ LR+ F+PFG I A+++ E R KGFGF+ F S ++A KA+ +
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 324 NGRIVGTKPLYVALAQRKEDRKA 392
+G+IV + ++V +A+ E+ +A
Sbjct: 69 DGKIVDGRLIFVEVAKNAEEVRA 91
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 60.9 bits (141), Expect = 9e-10
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 323
L+ +L + ++D+ L K FA F T AKV+ + G++KG+GFV F +P + A+ EM
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 324 NGRIVGTKPLYVALAQRKE 380
NG+ VG +P+ + + KE
Sbjct: 199 NGKYVGNRPIKLRKSSWKE 217
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
L+V L +E+L+ FA FG + A+V+ + GRSKGFGFV +++ E+A KA EM
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 324 NGRIVGTKPLYVALAQRKEDRK 389
N + + ++V A+ +E R+
Sbjct: 96 NAKFLDGWVIFVDPARPREPRR 117
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKA 311
G NL++ NLD +D++ L F+ FG I S ++ D G S+GFGF+ + S E + A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 312 VTEMNGRIVGTKPLYVALAQRKEDR 386
+ M G+ + + + V+ A +K+ +
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKDTK 195
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +3
Query: 132 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEAT 305
R Q +YV LD + +E L + F G + + V + + +GF+ + S E+A
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80
Query: 306 KAVTEMNGRIVGTKPLYVALAQRKEDRKA 392
A+ +N + KP+ V A +D+K+
Sbjct: 81 YAIKVLNMIKLHGKPIRVNKA--SQDKKS 107
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 58.4 bits (135), Expect = 5e-09
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKA 311
+G NL++ N+ D+ L F FG + SAKV ++ G SK FGFV + S A A
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNA 406
Query: 312 VTEMNGRIVGTKPLYVAL 365
+ MNGR +G K L V L
Sbjct: 407 IDMMNGRHLGGKKLKVQL 424
Score = 35.9 bits (79), Expect = 0.030
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 326
L+V L + + ++ F+ +GTI +++ SKG F+ + + E+A A+ +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 327 G--RIVG-TKPLYVALAQRKEDR 386
G ++ G T PL V A + +R
Sbjct: 168 GKHKMEGSTVPLVVKWADTERER 190
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +3
Query: 132 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 305
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+ AT
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 306 KAVTEMNGR 332
A++EM+G+
Sbjct: 91 AAISEMDGK 99
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +3
Query: 132 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 305
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+ AT
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 306 KAVTEMNGR 332
A++EM+G+
Sbjct: 91 AAISEMDGK 99
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 320
+L+VK D++ + RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV
Sbjct: 59 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 118
Query: 321 MNGRI 335
MNG++
Sbjct: 119 MNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 57.6 bits (133), Expect = 8e-09
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 320
+L+VK D++ + RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV
Sbjct: 78 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 137
Query: 321 MNGRIVGTKPLYVALAQ 371
MNG+ + + V Q
Sbjct: 138 MNGKFFDGRFILVKFGQ 154
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 314
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS +E KA+
Sbjct: 248 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 307
Query: 315 TEMNGRIVGTKPLYVALAQRKEDR 386
+NG + + + V+ A+ + R
Sbjct: 308 NSLNGADLDGRQIRVSEAEARPPR 331
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 120 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 293
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 294 EEATKAVTEMNGRIVGTKPLYV 359
E A + NG +PL V
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 314
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS +E KA+
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315
Query: 315 TEMNGRIVGTKPLYVALAQRKEDR 386
+NG + + + V+ A+ + R
Sbjct: 316 NSLNGADLDGRQIRVSEAEARPPR 339
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 120 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 293
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 294 EEATKAVTEMNGRIVGTKPLYV 359
E A + NG +PL V
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRV 172
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 311
+G ++V L + D L + F+ FG I ++MLE GRS+GFGF+ F+ ++
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 312 VTEMNGRIVGTKPLYVALAQRKEDR 386
+ EM+GR G + + V A+ K R
Sbjct: 65 IREMHGRDFGDRVISVNRAEPKLGR 89
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 314
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S A A+
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397
Query: 315 TEMNGRIVGTKPLYVAL 365
MNG + K L V L
Sbjct: 398 NTMNGCQLSGKKLKVQL 414
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 326
L+V L + + ++ F+ +GTI +++ + SKG F+ + S E+A A+ +N
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170
Query: 327 GRIV---GTKPLYVALAQRKEDRKA 392
GR + PL V A +++R+A
Sbjct: 171 GRHIMEGANVPLIVKWADTEKERQA 195
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 314
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S A A+
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388
Query: 315 TEMNGRIVGTKPLYVAL 365
MNG + K L V L
Sbjct: 389 NTMNGCQLSGKKLKVQL 405
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Frame = +3
Query: 90 LKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKG 266
L+ K+ + ERL V + KN+ +T ++ F+ +GTI +++ + SKG
Sbjct: 86 LQVKYADGELERLEHKLFVGMLPKNVSET----EVQSLFSEYGTIKDLQILRGSLQTSKG 141
Query: 267 FGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDRKA 392
F+ + S E+A A+ +NGR + PL V A +++R+A
Sbjct: 142 CLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQA 186
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
++V +L + D L F +G++ AKV+L+ GRSKG+GFV F+ E +A+TE
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 321 MNGRIVGTKPLYVALAQRK 377
MNG+ T+P+ + A K
Sbjct: 216 MNGQYCSTRPMRIGPAANK 234
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Frame = +3
Query: 72 AERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE- 248
A R L + E R NL+V L E LR FA FG + AKV+ +
Sbjct: 32 ASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
Query: 249 -DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 395
G SKGFGFV +++ E++ K + M+G+ + ++ A+ +E +++
Sbjct: 92 VSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSY 141
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +3
Query: 132 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEAT 305
RY LY+ L D+ L+ F+ F +T A+VM GRS+G+GFV F S + A
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86
Query: 306 KAVTEMNGR 332
A++ MNG+
Sbjct: 87 SAISAMNGQ 95
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 320
+LY+ NLD + +E L F+ FG + + V+ +D G S+GF F+ F S + A +A+
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRS-VLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 321 MNGRIVGTKPLYVALAQRKED 383
M+GR++G K L V + ED
Sbjct: 77 MDGRLIGQKILCVQRTPKVED 97
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 320
N++V +L + D L F+ F + + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 321 MNGRIVGTKPL 353
MNG+ V ++ +
Sbjct: 209 MNGKWVSSRQI 219
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 326
++Y N+ + + L++ FA G I S K++ +D S +GFV + A+ A+ +N
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLN 121
Query: 327 GRIVGTKPLYVALAQ---RKEDRKAH 395
GR + +P+ V A ++ED +H
Sbjct: 122 GRHIFGQPMKVNWAYATGQREDTSSH 147
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 317
Q +YV NL + L + F G +V ++ R KGFGFV +++ +EA A+
Sbjct: 267 QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNTHDEAALAIQ 324
Query: 318 EMNGR 332
N +
Sbjct: 325 MGNAQ 329
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 55.2 bits (127), Expect = 5e-08
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Frame = +3
Query: 30 VEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFA 209
+ G+ L V +A + R + R +E +YV NL +D+ RL + F+
Sbjct: 216 LNGRLLTVNKAAPRGSRPERAPRVYEP----------AFRVYVGNLPWDVDNGRLEQLFS 265
Query: 210 PFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 383
G + A+V+ E GRS+GFGFV S +E +A++ ++G+ + + + V +A+ +
Sbjct: 266 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325
Query: 384 RKAH 395
R+ +
Sbjct: 326 RRGY 329
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
L+V NL ++ + L F GT+ A+V+ E +S+GFGFV SS +EA AV +
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 324 N 326
N
Sbjct: 212 N 212
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
+YV NL T D+ LR+ F+ +G + A VM + RS+GFGFV +SS EA AV+ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 324 NGRIVGTKPLYVAL 365
+G+ + + + V L
Sbjct: 65 DGKELNGRRVSVKL 78
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 320
N++V +L + D L + F+ F + + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 321 MNGRIVGTKPL 353
MNG+ + ++ +
Sbjct: 205 MNGKWLSSRQI 215
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 326
++YV N+ + + L++ F G + S+K++ +D S +GFV + A A+ +N
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS--YGFVHYFDRRSAALAILSLN 117
Query: 327 GRIVGTKPLYVALAQ---RKEDRKAH 395
GR + +P+ V A ++ED +H
Sbjct: 118 GRHLFGQPIKVNWAYATGQREDTSSH 143
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 314
Q +YV NL + L + F G +V ++ R KGFGFV +++ EA A+
Sbjct: 263 QFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQ--RDKGFGFVRYNTHPEAALAI 319
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 54.8 bits (126), Expect = 6e-08
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +3
Query: 129 TRYQGV--NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPE 296
T+ +GV L++ L ++ L + F+ G + A+++++ RSKGFGFV F+S +
Sbjct: 27 TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASAD 86
Query: 297 EATKAVTEMNGRIVGTKPLYVALAQRKE 380
EA KA+ E NG+ + + ++V A+ K+
Sbjct: 87 EAQKALMEFNGQQLNGRTIFVDYAKAKQ 114
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 54.4 bits (125), Expect = 8e-08
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
L++ + ++D++ LR+ F +G + +V+L E GRS+GFGFV F+S E A+ A+ +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 324 NGR 332
+GR
Sbjct: 102 DGR 104
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 54.4 bits (125), Expect = 8e-08
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY---------QGVNLYVK 161
+ NG EL +G+PL V +R+ R + Y G +YV
Sbjct: 151 QFNGYEL-DGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVG 209
Query: 162 NLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRI 335
NL +DD L F+ G + A+V+ + GRSKGFGFV + S +E A+ ++G
Sbjct: 210 NLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269
Query: 336 VGTKPLYVALAQRKEDRKAH 395
+ + + V+ A+ + R+ +
Sbjct: 270 LDGRQIRVSEAEARPPRRQY 289
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 144 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 317
+ L+V NL +D +L + F G + +V+ + GRS+GFGFV SS E A
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
Query: 318 EMNGRIVGTKPLYV 359
+ NG + +PL V
Sbjct: 151 QFNGYELDGRPLRV 164
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 54.0 bits (124), Expect = 1e-07
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +3
Query: 48 YVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTIT 227
Y+GRA K K K E L E T ++ L+V NL T+ E L F G +
Sbjct: 151 YLGRALKVNFADKPKPNK-EPLYPE--TEHK---LFVGNLSWTVTSESLAGAFRECGDVV 204
Query: 228 SAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 380
A+V+ + GRS+G+GFVC+SS E A+ ++G + + + V LAQ K+
Sbjct: 205 GARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
LY NL +D L + F +V+ + G+S+GF FV S+ E+ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 324 NGRIVGTKPLYVALAQRKEDRKAHL 398
+G + L V A + + K L
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPL 171
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +3
Query: 144 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 314
++++V +L + D L + F+ + ++ SAKV+++ GRSKG+GFV F E ++A+
Sbjct: 202 LSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRAL 261
Query: 315 TEMNGRIVGTKPLYVALAQRK 377
TEMNG + + V +A K
Sbjct: 262 TEMNGAYCSNRQMRVGIATPK 282
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
++V +D + DE LR+ F+ FG + S K+ + KG GFV F+ + A A+ +NG
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV----GKGCGFVQFADRKSAEDAIESLNG 378
Query: 330 RIVG 341
++G
Sbjct: 379 TVIG 382
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +3
Query: 144 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 314
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 197 LSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 315 TEMNG 329
TEMNG
Sbjct: 257 TEMNG 261
Score = 34.3 bits (75), Expect = 0.090
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGT--ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 317
++V +L +D+ L FA I S KV+ +G S+G+GFV F S + A K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 318 EMNG 329
E NG
Sbjct: 163 EFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +3
Query: 144 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 314
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 197 LSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 315 TEMNG 329
TEMNG
Sbjct: 257 TEMNG 261
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Frame = +3
Query: 126 LTRYQG----VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSP 293
LTR +G ++V LD ++ DE L++ F FG I S K+ + KG GFV F +
Sbjct: 294 LTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV----GKGCGFVQFVNR 349
Query: 294 EEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 389
A +A+ ++NG ++G + + ++ + +++
Sbjct: 350 PNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 381
Score = 34.3 bits (75), Expect = 0.090
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGT--ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 317
++V +L +D+ L FA I S KV+ +G S+G+GFV F S + A K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 318 EMNG 329
E NG
Sbjct: 163 EFNG 166
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/93 (26%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = +3
Query: 99 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFG 272
+F ++K+ + V+NL + ++ L++EF+ FG I K++ ++ RSKG+
Sbjct: 25 RFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYA 84
Query: 273 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 371
F+ F+S ++A A+ M+ R+ + +Y+ +A+
Sbjct: 85 FIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAK 117
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +3
Query: 144 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 314
++++V +L + D L + FA + ++ AKV+++ GRSKG+GFV F E ++A+
Sbjct: 213 LSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAM 272
Query: 315 TEMNGRIVGTKPLYVALAQRK 377
TEMNG ++ + V +A K
Sbjct: 273 TEMNGAFCSSRQMRVGIATPK 293
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
++V LD + +E L + F+ FG + S K+ + KG GFV F++ + A +A+ +NG
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV----GKGCGFVQFANRQSAEEAIGNLNG 384
Query: 330 RIVG 341
++G
Sbjct: 385 TVIG 388
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 52.4 bits (120), Expect = 3e-07
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Frame = +3
Query: 30 VEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFA 209
V G+ L V RA + R + R ++ +YV NL +D RL + F+
Sbjct: 179 VNGRRLTVNRAAPRGSRPERQPRVYDA----------AFRIYVGNLPWDVDSGRLERLFS 228
Query: 210 PFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 383
G + A+V+ E GRS+GFGFV S+ E A+ ++G+ + + + V +A+ +
Sbjct: 229 EHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTR 288
Query: 384 R 386
R
Sbjct: 289 R 289
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
L+V NL +D + L F GT+ ++V+ + +S+GFGFV S+ EEA KAV +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 324 NGRIVGTKPLYVALAQRKEDR 386
N V + L V A + R
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSR 195
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEF-APFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 317
+++V +L + D L++ F + ++ AKV+ + GRSKG+GFV F+ E +A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 318 EMNGRIVGTKPLYVALAQRKED 383
EMNG T+P+ ++ A K++
Sbjct: 177 EMNGLYCSTRPMRISAATPKKN 198
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +3
Query: 156 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 335
V NLD + +E L+K F+ G + K+ +KG+G+V F + A +AV M G++
Sbjct: 241 VANLDQNVTEEELKKAFSQLGEVIYVKIPA----TKGYGYVQFKTRPSAEEAVQRMQGQV 296
Query: 336 VGTKPLYVA 362
+G + + ++
Sbjct: 297 IGQQAVRIS 305
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
++V +L + D L + F A + ++ AKV+ + GRSKG+GFV F+ E +A+TE
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 321 MNGRIVGTKPLYVALAQRKE 380
MNG+ ++P+ A K+
Sbjct: 235 MNGQYCSSRPMRTGPAANKK 254
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +3
Query: 144 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 314
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 199 LSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Query: 315 TEMNG 329
TEMNG
Sbjct: 259 TEMNG 263
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Frame = +3
Query: 111 LKSERLTRYQG----VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFV 278
+ S TR +G ++V LD ++ DE L++ F+ FG I S K+ + KG GFV
Sbjct: 291 MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV----GKGCGFV 346
Query: 279 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 389
F + A +A+ ++NG ++G + + ++ + +++
Sbjct: 347 QFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 383
Score = 34.7 bits (76), Expect = 0.068
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEF--APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 317
++V +L + +D+ L F A I S KV+ +G S+G+GFV F S + A K +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 318 EMNG 329
E NG
Sbjct: 165 EFNG 168
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 51.6 bits (118), Expect = 6e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
++V +L + D L + F A + ++ AKV+++ GR+KG+GFV FS E +A+TE
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 321 MNGRIVGTKPLYVALAQRKE 380
MNG T+P+ + A K+
Sbjct: 217 MNGVPCSTRPMRIGPAASKK 236
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 51.6 bits (118), Expect = 6e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
++V +L + D L + F A + ++ AKV+++ GR+KG+GFV FS E +A+TE
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 321 MNGRIVGTKPLYVALAQRKE 380
MNG T+P+ + A K+
Sbjct: 217 MNGVPCSTRPMRIGPAASKK 236
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 153 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 326
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 327 GRIVGTKPLYVALAQRK 377
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 153 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 326
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 327 GRIVGTKPLYVALAQRK 377
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 51.2 bits (117), Expect = 7e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 153 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 326
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 327 GRIVGTKPLYVALAQRK 377
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 51.2 bits (117), Expect = 7e-07
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Frame = +3
Query: 9 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG-VNLYVKNLDDTIDD 185
+LNG VEG+ + V +K +L L+SE +YV NL T+
Sbjct: 136 KLNGNT-VEGREIKVNITEKPIASSPDLS----VLQSEDSAFVDSPYKVYVGNLAKTVTK 190
Query: 186 ERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 338
E L F+ G + SAKV G SK GFGFV FSS E+ A+ +N ++
Sbjct: 191 EMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
+Y+ N+ T+ +E+L K G + +VM + GRS+ FGF S E+A V ++
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 324 NGRIVGTKPLYVALAQR 374
NG V + + V + ++
Sbjct: 138 NGNTVEGREIKVNITEK 154
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 50.8 bits (116), Expect = 1e-06
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEF--APFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 317
LYV NL LR+ F A F + SA+V+ D GRS G+GFV F++ EEA A+T
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 318 EMNGRIVGTKPLYVALAQR 374
++NG+ + +P+ + + R
Sbjct: 255 KLNGKEIMGRPITLKFSLR 273
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +3
Query: 51 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 230
V + A+ + + K E+ ++ L R L+V NL ++ + + F GT+ +
Sbjct: 68 VAEKETSADEETSQEEKTEETQNSNLKR----KLFVFNLPWSMSVNDISELFGQCGTVNN 123
Query: 231 AKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 374
+++ + DG+++GF FV +S EEA A+ + + V + + V+ A+R
Sbjct: 124 VEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 172
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV--- 314
++V L + D E L++ F FG I A V+L E G S+GFGFV + S E A A+
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 315 --TEMNGRIVGTKP 350
E++GRI+G P
Sbjct: 98 QNKELDGRIIGVHP 111
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = +3
Query: 183 DERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 362
D+ LR+ FAPF + + + R KGFGF+ F S ++A KA+ +NG+IV + ++V
Sbjct: 84 DQSLRQLFAPFARLIKDQ---QTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVE 140
Query: 363 LAQRKE 380
A+ E
Sbjct: 141 TAKEVE 146
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITS----AKVMLED--GRSKGFGFVCFSSPEEATK 308
N++V +L + D L F+ F + +S A+VM + GRS+GFGFV F + ++A
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208
Query: 309 AVTEMNGRIVGTKPL 353
A+ EMNG+ V ++ +
Sbjct: 209 AINEMNGKWVSSRQI 223
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 326
++Y N+ + + L++ FA G I S K++ +D S +GFV + A+ A+ +N
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLN 121
Query: 327 GRIVGTKPLYVALAQ---RKEDRKAH 395
GR + +P+ V A ++ED +H
Sbjct: 122 GRHIFGQPMKVNWAYATGQREDTSSH 147
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 317
Q +YV NL + L + F G +V ++ R KGFGFV +++ +EA A+
Sbjct: 271 QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNTHDEAALAIQ 328
Query: 318 EMNGR 332
N +
Sbjct: 329 MGNAQ 333
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 135 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATK 308
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++ + A
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANT 536
Query: 309 AVTEMNGRIVGTKPLYVALA 368
AV MNG + L V +A
Sbjct: 537 AVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 135 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATK 308
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++ + A
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANT 536
Query: 309 AVTEMNGRIVGTKPLYVALA 368
AV MNG + L V +A
Sbjct: 537 AVQAMNGYRFEGRTLAVRIA 556
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 320
N++V +L + D L F+ + T + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 321 MNGRIVGTKPL 353
+ G+ +G++ +
Sbjct: 200 ITGKWLGSRQI 210
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 326
++YV N+ + + L++ FA G + S K++ ++ S +GFV + A A+ +N
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS--YGFVHYFDRRSAGLAILSLN 112
Query: 327 GRIVGTKPLYVALAQ---RKEDRKAH 395
GR + +P+ V A ++ED +H
Sbjct: 113 GRHLFGQPIKVNWAYASGQREDTSSH 138
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 314
Q +YV NL + L + F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 258 QYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHVEAALAI 314
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+ A A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 324 NGRIVGTKPLYVALAQRK 377
+GR +G K + V A+ K
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+ A A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 324 NGRIVGTKPLYVALAQRK 377
+GR +G K + V A+ K
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
L++ L ++D++ L+ F+ FG + ++ + GRS+GFGFV F+ +A A M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 324 NGRIVGTKPLYVALA 368
+G+ + +PL ++ A
Sbjct: 103 DGKGLLGRPLRISFA 117
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 153 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 326
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 327 G 329
G
Sbjct: 69 G 69
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/80 (33%), Positives = 41/80 (51%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
LYVKN+ + E+L++ F G +T G + FGFV ++ A KAV +
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
Query: 330 RIVGTKPLYVALAQRKEDRK 389
V +PL V LA+ + +RK
Sbjct: 354 YEVNGQPLEVVLAKPQAERK 373
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 314
G +++ L + +E LR G I ++M + G SKG+ FV F + + A KA+
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 315 TEMNGRIVGTKPLYVALAQRK 377
E++ + K + +L++ K
Sbjct: 175 EELHSKEFKGKTIRCSLSETK 195
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 153 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 326
++ L T D LR F +G + AKV+L+ GRS+GFGF+ F + +A+ MN
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 327 GRIVGTKPLYVALAQ 371
G + + + V AQ
Sbjct: 70 GMDLDGRTITVDKAQ 84
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 323
L+VK + + +E L + F+ +G + V+++ R KGF +V FSS EEA KA+ E+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 324 NGRIV 338
N ++V
Sbjct: 83 NAQLV 87
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +3
Query: 126 LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEA 302
+T G ++YV L I +E +R+ F+ +G++ + K++ + R K +GFV FS+ A
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 303 TKAVTEMNGRIVGTKPLYV 359
A+ +M+G+ +G + + V
Sbjct: 61 DDAIEDMDGKSIGGRAVRV 79
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +3
Query: 117 SERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 290
S+ +R+ ++ V NL + L + F PFG +T V ++ S+GFGFV F S
Sbjct: 165 SDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVS 224
Query: 291 PEEATKAVTEMNG 329
E+A +A+ ++NG
Sbjct: 225 REDAQRAINKLNG 237
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
++V + + D+ LR+ F+ +G + AK+++ E GRS+GF FV F+S EEA+ A+ ++
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QL 94
Query: 324 NGR 332
+G+
Sbjct: 95 DGQ 97
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 323
LYV L ++ LR F FG + ++++ R KGF F+ + + EEA KA+ M
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 324 NGRIVGTKPLYVALAQRKED 383
+G+ + + ++V A+ + D
Sbjct: 139 HGKFLDGRVIFVEEAKTRSD 158
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.6 bits (108), Expect = 9e-06
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
+Y NL + + L+ F + AKV+ E GRS+GFGF+ F S E A+ M
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 324 NGRIVGTKPLYVALAQRKE 380
NG V + L + LA +E
Sbjct: 281 NGVEVEGRALRLNLASERE 299
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +3
Query: 51 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 230
V ++ E E + + E+ K + LYV NL TI L + F GT+
Sbjct: 85 VEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144
Query: 231 AKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 359
+++ + RS+GFGFV S EEA +A+ N +G + + V
Sbjct: 145 VQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
L++ L ++ LR F FG + K++++ RSKG+ F+ +++ E A A+ EM
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 324 NGRIVGTKPLYVALAQRKEDRK 389
NG+I+ + V +A+ K R+
Sbjct: 344 NGKIINGWMIVVDVAKTKPFRQ 365
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +3
Query: 156 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 329
V NL + + L + F PFG +T V ++ G S+GFGFV F S E+A +A+ ++NG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE 320
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 321 ---MNGRIVGTK 347
++GR+V K
Sbjct: 67 KHNIDGRLVEAK 78
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 317
++V L ++ + + F FGT T VM + R +GFGF+ + S E K +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 318 --EMNGRIVGTK 347
E+NG++V K
Sbjct: 170 FHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE 320
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 321 ---MNGRIVGTK 347
++GR+V K
Sbjct: 67 KHNIDGRLVEAK 78
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 317
++V L ++ + + F FGT T VM + R +GFGF+ + S E K +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 318 --EMNGRIVGTK 347
E+NG++V K
Sbjct: 170 FHELNGKMVEVK 181
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 323
L+V + D+++LR+ F +G ++ A VM + GR +GFGFV FS P + + E
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 324 NGRIVGTKPLYVALAQRKEDRK 389
+ + T+ + V A +E+++
Sbjct: 68 HS--IDTREVDVKRAMSREEQQ 87
Score = 44.0 bits (99), Expect = 1e-04
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Frame = +3
Query: 12 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN----LYVKNLDDTI 179
L K ++ + + V RA + E+Q + + L + R + N ++V L T+
Sbjct: 64 LQEKHSIDTREVDVKRAMSREEQQ--VSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTL 121
Query: 180 DDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 353
DE R+ F +G +T +M + R +GFGFV F S E+A +V + K +
Sbjct: 122 TDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLHKTFHDLSGKQV 180
Query: 354 YVALAQRKE 380
V A K+
Sbjct: 181 EVKRALPKD 189
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +3
Query: 153 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 326
+V L DD L FA +G + +K++ E GRS+GFGFV F + A+ MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 327 GRIVGTKPLYVALAQRK 377
G+ + + + V AQ +
Sbjct: 71 GQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +3
Query: 153 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 326
+V L DD L FA +G + +K++ E GRS+GFGFV F + A+ MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 327 GRIVGTKPLYVALAQRK 377
G+ + + + V AQ +
Sbjct: 71 GQDLDGRSITVNEAQSR 87
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 46.8 bits (106), Expect = 2e-05
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Frame = +3
Query: 6 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE--RLTRYQGV--NLYVKNLDD 173
I L+G+ L+ G+P+ V K +E +K L + L Y G LYV NL
Sbjct: 240 IALSGQPLL-GQPVMV----KPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHI 294
Query: 174 TIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 335
+ ++ LRK F FG++ +V E G KGFGFV F+ E+A A+ +NG++
Sbjct: 295 NMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLNGQL 348
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +3
Query: 114 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 287
K+E + + + LYV N+ + D +L F PFGT+ S +V + G S+G G+V
Sbjct: 98 KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMG 157
Query: 288 SPEEATKAVTEMNGRIVGTKPLYV 359
S A A+ ++G VG + + V
Sbjct: 158 SINSAKIAIASLDGTEVGGREMRV 181
Score = 41.1 bits (92), Expect = 8e-04
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Frame = +3
Query: 57 RAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDDERLRKEFAPFGTIT 227
R + + +R E L S +++ Y+ + +YV NL + LR F+ FGTI
Sbjct: 180 RVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIV 239
Query: 228 SAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
S +V+ + GR++ F F+ F+S EE A++ NG
Sbjct: 240 STRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNG 274
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEA 302
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 177 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADG 236
Query: 303 TKAVTEMNGRIV 338
A EM G IV
Sbjct: 237 QAAKDEMQGIIV 248
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
LYV NLD ++ + + F+ FG + V+ + +S+G FV + S E+A KA M
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 324 NGRIVGTKPLYVALA 368
+ +I+ + L V++A
Sbjct: 119 DAKILNGRKLTVSIA 133
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 320
L++ + D+ERL++ F +G + A +M + GR++GFGF+ F+ P A + + +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 321 --MNGRIVGTK 347
++GR V K
Sbjct: 77 HIIDGRTVEAK 87
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 311
++V L +I + + F FGTI VM + R +GFGF+ F S E K
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 183
Query: 312 VTEMNGRIVGTK 347
E+NG++V K
Sbjct: 184 FHELNGKMVEVK 195
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 323
LYV L D +++ L F PFG I K L+ K FGFV F E+A+ A+ M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 324 NG 329
+G
Sbjct: 75 DG 76
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEA 302
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADG 244
Query: 303 TKAVTEMNGRIV 338
A +M G IV
Sbjct: 245 EAAKEKMQGIIV 256
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Frame = +3
Query: 81 QKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 251
Q+ + R + L+S RLT ++ L+++ L E LR F+ +G + A V+L+
Sbjct: 51 QEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDK 110
Query: 252 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 341
G+SKG+GFV F + A A+ E + +I G
Sbjct: 111 VTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Frame = +3
Query: 81 QKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 251
Q+ + R + L+S RLT ++ L+++ L E LR F+ +G + A V+L+
Sbjct: 51 QEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDK 110
Query: 252 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 341
G+SKG+GFV F + A A+ E + +I G
Sbjct: 111 VTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 171 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 344
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
Query: 345 K 347
K
Sbjct: 86 K 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 171 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 344
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
Query: 345 K 347
K
Sbjct: 86 K 86
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 320
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 321 --MNGRIVGTK 347
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.7 bits (96), Expect = 3e-04
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Frame = +3
Query: 21 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDDER 191
K +++G+ + +A + ++Q LKR + G ++V L +I +E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQV-LKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 192 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 347
+ F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 320
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 321 --MNGRIVGTK 347
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.7 bits (96), Expect = 3e-04
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Frame = +3
Query: 21 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDDER 191
K +++G+ + +A + ++Q LKR + G ++V L +I +E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQV-LKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 192 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 347
+ F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 320
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 321 --MNGRIVGTK 347
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.7 bits (96), Expect = 3e-04
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Frame = +3
Query: 21 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDDER 191
K +++G+ + +A + ++Q LKR + G ++V L +I +E
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQV-LKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 192 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 347
+ F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMN 326
L+ NL I + F G + ++ +DG KG+G + F+SPEEA KA+ EMN
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL-EMN 444
Query: 327 GRIVGTKPLYVALAQRK 377
G+++ + + + LA +
Sbjct: 445 GKLLLGRDVRLDLANER 461
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
+L V+NL E LRK F FG + + + G +GFGFV F P +A A
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 321 MNGRIVGTKPLYVALAQRKEDRK 389
M+G ++ + L V A+ E+RK
Sbjct: 97 MDGYLLLGRELTVVFAE--ENRK 117
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 171 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 344
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85
Query: 345 K 347
K
Sbjct: 86 K 86
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 317
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
Query: 318 --EMNGRIVGTK 347
E+NG++V K
Sbjct: 95 FHELNGKMVEVK 106
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 317
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 318 --EMNGRIVGTK 347
E+NG++V K
Sbjct: 168 FHELNGKMVEVK 179
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 311
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P A +
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 312 VT---EMNGRIVGTK 347
V ++G+IV K
Sbjct: 64 VLLKHIIDGKIVEAK 78
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 317
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 318 --EMNGRIVGTK 347
E+NG++V K
Sbjct: 168 FHELNGKMVEVK 179
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 311
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P A +
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 312 VT---EMNGRIVGTK 347
V ++G+IV K
Sbjct: 64 VLLKHIIDGKIVEAK 78
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
+L V+NL E LR+ F FG + + + G +GFGF+ F P +A +A +
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 321 MNGRIVGTKPLYVALAQRKEDRK 389
M+G ++ + L V A+ E+RK
Sbjct: 98 MDGYLLLGRELTVVFAE--ENRK 118
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 42.7 bits (96), Expect = 3e-04
Identities = 31/76 (40%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 323
+YV L E L F FG I AKV+ + RSKGFGFV F E AT+A
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 324 N----GRIVGTKPLYV 359
N GR V K Y+
Sbjct: 71 NHTIDGRTVNCKLAYL 86
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 323
++V L + +R+ F FG I A V+ + GRSKG+GFV F E A +A M
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 324 NGRIVGTK 347
N I G +
Sbjct: 84 NPVIDGRR 91
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Frame = +3
Query: 153 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA----- 311
+V+ LD D++ L F+ FG + +K++ + G+S+ FGFV F + T A
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 312 VTEMNGRIVGTKPLYVALA-QRKEDRKA 392
V E + V + V +A QR+++R A
Sbjct: 70 VEESRSKCVNVGSITVEVARQRRKNRSA 97
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 153 YVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 326
+V L D++ + + F FG + +K+++ E GRSKGF FV F + A+ MN
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 327 GR 332
G+
Sbjct: 107 GQ 108
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 323
++V L E LR+ F +G I A V+ + GRSKG+GFV F PE A +A +
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 324 NGRIVGTK 347
I G +
Sbjct: 86 TPIIDGRR 93
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 323
++V L E LR+ F +G I A V+ + GRSKG+GFV F PE A +A +
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDP 85
Query: 324 NGRIVGTK 347
I G +
Sbjct: 86 TPIIDGRR 93
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
LYV NL + + +LR+ F FG + ++ L E G+ KGFGF+ F E + A +
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 324 NGRI 335
NG++
Sbjct: 327 NGKL 330
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 150 LYVKNLDDT-IDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 323
+ VKNL + +ERLR F+ G I K+ + DG+S+ F ++ F + +EA A+T +
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63
Query: 324 NGRIVGTKPLYVALA 368
N + T + V +A
Sbjct: 64 NKCFIDTYRISVEVA 78
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 323
L V+ LD+ D+E LR EF+ I +++ + S+GF FV F S E+ATKA+
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 324 N 326
N
Sbjct: 520 N 520
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
L V + ID + L+ + FG + VM + GRS+GFG+V F+S E+A A+
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--K 62
Query: 324 NGRIVGTKPLYVALAQRKEDRK 389
+G + L V +A KE+ +
Sbjct: 63 GEHFLGNRILEVKVATPKEEMR 84
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Frame = +3
Query: 57 RAQKKAERQKELK-RKFEQLKSERLTRYQ----GVNLYVKNLDDTIDDERLRKEFAPFGT 221
R +K ++RQ+ L R FE L S+ Q G + V + + +E + F FG
Sbjct: 61 REEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGE 120
Query: 222 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 329
I + + L+ G KG+ + + EEA A++ MNG
Sbjct: 121 IKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 192 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 192 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAV 314
G +LYV L + + L FA G +T ++L+ S+GFGF+ S +A + +
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 315 TEMNGRIVGTKPLYVALAQRKEDR 386
++ ++ + + V A+R+ R
Sbjct: 134 RSLDHSVLQGRVITVEKARRRRGR 157
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Frame = +3
Query: 66 KKAERQKELKR--KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 239
+K + ++ L R K +K+ TR ++V L ++++ L+ F +G I ++
Sbjct: 133 RKVDLKRTLPRGDKDTDIKAVSKTR----KIFVGGLPPLLEEDELKNYFCVYGDIIEHQI 188
Query: 240 MLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 377
M + GRS+GFGFV F + + + ++ +G K + + A+ K
Sbjct: 189 MYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
L+V + E F FG + + +M + G +GFGFV F+ A K + E
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +3
Query: 78 RQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-- 251
+Q E+KR + S ++ ++V + ++DD+ ++ F FG + ++M +
Sbjct: 109 KQVEIKRTIPR-GSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHST 167
Query: 252 GRSKGFGFVCFSSPE 296
GRS+GFGFV + S +
Sbjct: 168 GRSRGFGFVTYESED 182
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
++V L K F +G IT + +M + G+ +GFGFV ++ K + +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD- 102
Query: 324 NGRIVG 341
N I+G
Sbjct: 103 NHIIIG 108
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 41.1 bits (92), Expect = 8e-04
Identities = 29/110 (26%), Positives = 55/110 (50%)
Frame = +3
Query: 60 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 239
+Q+ +R + E + E L+R L+V+N+D +I+D L F FG + +
Sbjct: 187 SQRDGKRGSNVSTVAEHPQGEILSRI----LFVRNVDSSIEDCELGVLFKQFGDV---RA 239
Query: 240 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 389
+ G+++GF V + A KA ++GR++ + L + + KE+ K
Sbjct: 240 LHTAGKNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIRYSIPKENPK 289
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 320
N++V+ L E L+ F +G IT V+++ GR+KGFGFV F + + A A+
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223
Query: 321 MNGRI 335
R+
Sbjct: 224 PEKRM 228
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 41.1 bits (92), Expect = 8e-04
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Frame = +3
Query: 12 LNGKELVEGKPLYVGRAQKKAERQKE------LKRKFEQLKSE-RLTRYQGVN-----LY 155
L + GKP+ V +A +K E ++ L+RK +Q+ R GV ++
Sbjct: 64 LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIF 123
Query: 156 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG---RSKGFGFVCFSSPEEATKAVTEMN 326
V L +E + F FG T VM DG R +GFGFV + S E++ + V + N
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVM-HDGVTNRPRGFGFVTYDS-EDSVEVVMQSN 181
Query: 327 GRIVGTKPLYVALAQRKE 380
+ K + V A KE
Sbjct: 182 FHELSDKRVEVKRAIPKE 199
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +3
Query: 135 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATK 308
Y L+V + +E L++ F+ +G + A V E G+ +GFGFV F++ + K
Sbjct: 3 YDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK 62
Query: 309 AVTEMNGRIVGTKPLYVALAQRKED 383
A+ + + I+G KP+ V A RK +
Sbjct: 63 ALRDTH-FILG-KPVDVRKAIRKHE 85
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 317
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 318 EMNGRIVGTKPLYVAL 365
+ N + KP+ + +
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 317
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 318 EMNGRIVGTKPLYVAL 365
+ N + KP+ + +
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 317
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 318 EMNGRIVGTKPLYVAL 365
+ N + KP+ + +
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
L ++NL LR F FG + + G +GFGFV + E+A +A+ M
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 324 NGRIVGTKPLYVALAQRKEDRK 389
N +++G + + + A+ E+RK
Sbjct: 109 NHKVIGGREIAIVFAE--ENRK 128
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
+YV NLD + + L EF FG + S V R G+ F+ F P +A A+ ++G
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVA---RRPPGYAFLDFEDPRDARDAIRALDG 60
Query: 330 R 332
+
Sbjct: 61 K 61
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 249 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 392
DG+S+ FGF+ F S +EA +A+ N +GT + V +A + D A
Sbjct: 5 DGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENA 52
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKA 311
L+VKN+ LR+ F+PFG I S ++ ++ G+ G+ FV F + +EA A
Sbjct: 671 LHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNA 725
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
++V + T+ ++ L+ FA +G + +V+ E RS+GFGFV F S E + +++
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 324 N 326
N
Sbjct: 171 N 171
Score = 35.9 bits (79), Expect = 0.030
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 320
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P K + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 321 --MNGRIVGTK 347
+NG+ V K
Sbjct: 81 HVINGKQVEIK 91
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
++V + T+ ++ L+ FA +G + +V+ E RS+GFGFV F S E + +++
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 324 N 326
N
Sbjct: 171 N 171
Score = 35.9 bits (79), Expect = 0.030
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 320
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P K + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 321 --MNGRIVGTK 347
+NG+ V K
Sbjct: 81 HVINGKQVEIK 91
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 293
L++ + D+ LR+ F+ FG + VM E GR +GFGFV FS P
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 311
++V L + + R F +G ++ A +M++ R +GFGFV F S + K
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKT 171
Query: 312 VTEMNGRIVGTK 347
++NG+ V K
Sbjct: 172 FHDLNGKQVEVK 183
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 323
L+V L+ +DE L F+ FGT+ SA V+ + G S + F+ F + E +A +M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 324 NGRIVGTKPLYVALAQ 371
+ ++ + ++V +Q
Sbjct: 305 DNALIDDRRIHVDFSQ 320
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/90 (28%), Positives = 44/90 (48%)
Frame = +3
Query: 102 FEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVC 281
F QL + QG +L + NL+ T+ LR F +G + K + E + FV
Sbjct: 170 FPQLNAVPEGNNQG-SLVIMNLEPTVSSSTLRHIFQVYGEV---KQVRETPCKREQRFVE 225
Query: 282 FSSPEEATKAVTEMNGRIVGTKPLYVALAQ 371
F +A KA+ MNG+++ KP+ + ++
Sbjct: 226 FFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 314
G LYV L + D+ L FA G + S +++E S+GF FV SS ++A + +
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 315 TEMNGRIV 338
+N ++
Sbjct: 131 KYLNQSVL 138
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 314
G LYV L + D+ L FA G + S +++E S+GF FV SS ++A + +
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 315 TEMNGRIV 338
+N ++
Sbjct: 130 KYLNQSVL 137
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/112 (21%), Positives = 52/112 (46%)
Frame = +3
Query: 24 ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 203
+L +G + R + + ++ + ++ + + + R +YV ++D + +E L
Sbjct: 132 KLADGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRR---TVYVSDIDQQVTEENLAGV 188
Query: 204 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 359
F G + +V + F F+ F++ EE +A M+G ++G PL V
Sbjct: 189 FINCGQVVDCRVCGDPNSVLRFAFIEFTN-EEGARAALSMSGTVLGFYPLKV 239
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
+YV NLD + + L EF FG I S V R G+ F+ F +A A+ E++G
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVA---RRPPGYAFLDFEDSRDARDAIREVDG 60
Query: 330 R 332
+
Sbjct: 61 K 61
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 186 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 347
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 186 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 347
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 186 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 347
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 326
L+V +L+ ++ + + F FG + +M ++ R S+G GFV +SS E A A+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 327 GRIV---GTKPLYVALAQRKEDR 386
G +PL V A+ K +
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 326
L+V +L+ ++ + + F FG + +M ++ R S+G GFV +SS E A A+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 327 GRIV---GTKPLYVALAQRKEDR 386
G +PL V A+ K +
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPK 295
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
L+ NL I+ + F G + + +DG +GFG V F+S EEA KA+ E
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-EF 357
Query: 324 NGRIVGTKPLYVALAQRKEDR 386
+GR + + + + +AQ + +R
Sbjct: 358 HGRPLLGREIRLDIAQERGER 378
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 326
L+V NL + F G + S ++M+ +G+ G+GFV F+S +E KA+ N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 327 GRIVGTKPLYVALAQ 371
G + +++ +A+
Sbjct: 306 GEYLHDHKIFIDVAK 320
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 326
L+V NL + K F + ++++ G G GFV F+S EA KA+ +MN
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 327 GRIVGTKPLYVALAQ 371
G + ++ +++ + +
Sbjct: 551 GENLRSREIFLDVVE 565
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 326
L+V NL + F G + ++++ G+ G GFV F+S EA +A+ + N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 327 GRIVGTKPLYVALAQRK 377
G + +++ +A +K
Sbjct: 189 GECLDNNKIFLDVANKK 205
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 38.7 bits (86), Expect = 0.004
Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Frame = +3
Query: 462 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 641
P S F P PPAP + AQ W QP RP Q++ Y PTY PA
Sbjct: 208 PPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY----PTYSPA 259
Query: 642 P---RAPAQSTIRTSLGARPITG--QQGVAAAAASIRPP 743
P + P +S + P +G QQ + A PP
Sbjct: 260 PPGNQPPVESLPSSMQMQSPYSGPPQQSMQAYGYGAAPP 298
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 38.7 bits (86), Expect = 0.004
Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Frame = +3
Query: 462 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 641
P S F P PPAP + AQ W QP RP Q++ Y PTY PA
Sbjct: 266 PPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY----PTYSPA 317
Query: 642 P---RAPAQSTIRTSLGARPITG--QQGVAAAAASIRPP 743
P + P +S + P +G QQ + A PP
Sbjct: 318 PPGNQPPVESLPSSMQMQSPYSGPPQQSMQAYGYGAAPP 356
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSSPEEATKA 311
+G ++YV++L + + L EF FG IT+ + + + R G +GFV F + A +A
Sbjct: 317 EGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRA 376
Query: 312 VTEMNGRIVGTK 347
+ +I G +
Sbjct: 377 IEASPVKIGGLR 388
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 129 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEA 302
++ Q L ++NL ++ F+ G + + E G KGF FV F+ ++A
Sbjct: 326 SKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDA 385
Query: 303 TKAVTEMNGRIVGTKPLYVALAQRK 377
A+ + NG + G +P+ V A K
Sbjct: 386 ANAIKKFNGHMFGKRPIAVDWAVPK 410
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
+L V N+ + L FA +G + + + G S+GF FV + +EA KAV
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 321 MNGRIVGTKPLYVALAQ 371
++GR+V + + V A+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 320
+L V N+ + L FA +G + + + G S+GF FV + +EA KAV
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 321 MNGRIVGTKPLYVALAQ 371
++GR+V + + V A+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF--SSPEEATKAV 314
GV L+V L +++ + L K F+P GT+ + + + GRS F ++ F SS TK
Sbjct: 9 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRS--FAYIDFSPSSTNSLTKLF 66
Query: 315 TEMNG 329
+ NG
Sbjct: 67 STYNG 71
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 317
G LY+ NLD + +E +++ F+ G + + + GRSKG V FS +A AV
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 318 EMN 326
N
Sbjct: 167 RYN 169
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 314
++V NL + LR+ F FG + A V+ E GRSKG+GF+ F +A+
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 320
N++V+ E L+ F +G I V+++ GR KG+GFV F + + A +A+
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
Query: 321 MNGRI 335
R+
Sbjct: 469 PEKRM 473
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
LY+ + + + F+ FGT+ +V + G+SK FGF+ F PE A A M
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 324 N 326
N
Sbjct: 122 N 122
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 138 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCF 284
+G NL++ N+ D+ L F FG + SAKV ++ G SK FG + F
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
Score = 35.9 bits (79), Expect = 0.030
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 326
L+V L + + ++ F+ +GTI +++ SKG F+ + + E+A A+ +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 327 G--RIVG-TKPLYVALAQRKEDR 386
G ++ G T PL V A + +R
Sbjct: 168 GKHKMEGSTVPLVVKWADTERER 190
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAV 314
G +LYV L + + L FA G +T ++L+ S+GFGF+ S +A + +
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 315 TEMNGRIV 338
++ ++
Sbjct: 104 RSLDHSVL 111
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 36.3 bits (80), Expect = 0.022
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
LYV+NL I E + F +G I ++ D +KG FV + +A AV ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGC-DKATKGTAFVVYEDIYDAKNAVDHLSG 79
Query: 330 RIVGTKPLYVALAQRKEDRK 389
V + L V Q + K
Sbjct: 80 FNVANRYLIVLYYQHAKMSK 99
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 36.3 bits (80), Expect = 0.022
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = +3
Query: 63 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 242
++ AER +++ + + E L + ++V L + L F +G I K +
Sbjct: 104 KEAAERHRDVANRIRIVADEDLVHRK---IFVHGLGWDTKADSLIDAFKQYGEIEDCKCV 160
Query: 243 LE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
++ G+SKG+GF+ F S A A+ + +I GT+ LA
Sbjct: 161 VDKVSGQSKGYGFILFKSRSGARNALKQPQKKI-GTRMTACQLA 203
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 35.5 bits (78), Expect = 0.039
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 492 SLPPAPRYYGPAQMT--QIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 647
++PP P P Q T Q +PT P+ PP+ PSTQ S +QPT P+
Sbjct: 52 TMPPVPSLPTPGQQTLPQPQPTLPQPTGLPPM-PSTQIPSLPNQVQPTIPNIPQ 104
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 35.5 bits (78), Expect = 0.039
Identities = 29/85 (34%), Positives = 38/85 (44%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 668
P PP P P+ +TQI+P TP N P S+ S+ A P+ P P P +
Sbjct: 14 PETPPQPSDSKPSTLTQIQP-TPSTNPSPSSVVSS-IPSSPAPQSPSLNPNPNPPQYTRP 71
Query: 669 RTSLGARPITGQQGVAAAAASIRPP 743
TS P T QQ + +RPP
Sbjct: 72 VTS----PAT-QQQQHLSQPLVRPP 91
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 665
P PP P Y P Q + +P TP ++ PPV+P P +P P P T
Sbjct: 474 PVKPPTPTYSPPVQPPPVQKPPTPTYS--PPVKPPPIQKPPTPTYSPPIKPPPVKPPTPT 531
Query: 666 IRTSLGARPITGQQGVAAAAASIRPP 743
+ P+ + + I+PP
Sbjct: 532 YSPPIKPPPV-HKPPTPTYSPPIKPP 556
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP-RAPAQSTIRT 674
PP P Y P + ++P TP ++ PP++P P +P P P T
Sbjct: 511 PPTPTYSPPIKPPPVKPPTPTYS--PPIKPPPVHKPPTPTYSPPIKPPPIHKPPTPTYSP 568
Query: 675 SLGARPITGQQGVAAAAASIRPPLV 749
+ P+ + + I+PP V
Sbjct: 569 PIKPPPV-HKPPTPTYSPPIKPPPV 592
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP-RAPAQSTIRT 674
PP P Y P ++ ++P TP ++ PPV+P P +P P P T
Sbjct: 411 PPTPTYSPPIKLPPVKPPTPIYS--PPVKPPPVHKPPTPIYSPPVKPPPVHKPPTPTYSP 468
Query: 675 SLGARPITGQQGVAAAAASIRPPLVSQ 755
+ P+ + + ++PP V +
Sbjct: 469 PIKPPPV--KPPTPTYSPPVQPPPVQK 493
Score = 32.3 bits (70), Expect = 0.36
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = +3
Query: 495 LPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIR 671
LPP P Y P + ++ P TP ++ PPV+P PTY P + P
Sbjct: 679 LPPTPTYSPPVKPPPVQVPPTPTYS--PPVKPPPVQVPP----TPTYSPPIKPPPVQVPP 732
Query: 672 TSLGARPITGQQGVAAAAASIRPPL 746
T P G G A + P+
Sbjct: 733 TPTTPSPPQGGYGTPPPYAYLSHPI 757
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 644
PP P Y P + ++P TP ++ PPV+P P +P P
Sbjct: 327 PPTPTYSPPIKPPPVKPPTPIYS--PPVKPPPVHKPPTPIYSPPVKPPP 373
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP-RAPAQSTIR 671
PP P Y P + ++ P TP ++ PPV+P P +P P + P T
Sbjct: 663 PPTPTYSPPVKPPPVQLPPTPTYS--PPVKPPPVQVPPTPTYSPPVKPPPVQVPPTPTYS 720
Query: 672 TSLGARPI 695
+ P+
Sbjct: 721 PPIKPPPV 728
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT 674
PP P Y P + + +P TP ++ PP++P + P Y P + P T T
Sbjct: 225 PPTPTYSPPVKPPPVHKPPTPIYS--PPIKPPP----VHKPPTPIYSPPVKPPPVQTPPT 278
Query: 675 SLGARPITGQQGVAAAAASIRPPLVS 752
+ + P+ + PP+ S
Sbjct: 279 PIYSPPVKPPPVHKPPTPTYSPPVKS 304
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT 674
PP P Y P + ++ P TP ++ PPV+P + PTY P ++P T
Sbjct: 259 PPTPIYSPPVKPPPVQTPPTPIYS--PPVKPPP----VHKPPTPTYSPPVKSPPVQKPPT 312
Query: 675 SLGARPITGQQGVAAAAASIRPPL 746
+ PI + PP+
Sbjct: 313 PTYSPPIKPPPVQKPPTPTYSPPI 336
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 653
P PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 524 PVKPPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----IHKPPTPTYSPPIKPP 573
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT 674
PP P Y P + + +P TP ++ PPV+P PTY P + P T
Sbjct: 646 PPTPTYSPPIKPPPVQKPPTPTYS--PPVKPPPVQLPP----TPTYSPPVKPPPVQVPPT 699
Query: 675 SLGARPITGQQGVAAAAASIRPPL 746
+ P+ + PP+
Sbjct: 700 PTYSPPVKPPPVQVPPTPTYSPPI 723
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 653
PP P Y P + ++ P TP ++ PP++P + PTY P + P
Sbjct: 141 PPTPSYSPPVKPPPVQMPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 187
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 644
PP P Y P + +P TP ++ PP++P P +P P
Sbjct: 175 PPTPTYSPPIKPPVHKPPTPIYS--PPIKPPPVHKPPTPIYSPPIKPPP 221
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT 674
PP P Y P + + +P TP ++ PP++P + PTY P + P T
Sbjct: 191 PPTPIYSPPIKPPPVHKPPTPIYS--PPIKPPP----VHKPPTPTYSPPVKPPPVHKPPT 244
Query: 675 SLGARPI 695
+ + PI
Sbjct: 245 PIYSPPI 251
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 653
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 561 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 607
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 653
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 578 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 624
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 653
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 595 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 641
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 653
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 612 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 658
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 35.1 bits (77), Expect = 0.052
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 314
++YV N+D E ++ F GT+ ++++ G+ KGF +V F E +A+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 315 -TEMNGRIVGTKP 350
+E++GR + P
Sbjct: 150 ESELHGRQLKVSP 162
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 35.1 bits (77), Expect = 0.052
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 314
++YV N+D E ++ F GT+ ++++ G+ KGF +V F E +A+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 315 -TEMNGRIVGTKP 350
+E++GR + P
Sbjct: 150 ESELHGRQLKVSP 162
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 35.1 bits (77), Expect = 0.052
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Frame = +3
Query: 63 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI---DDERLRKEFAPFGTITSA 233
Q + E + + K E+ ++ + Q ++V NL I + E ++F P +
Sbjct: 138 QFRDEFRSDTKPPEEETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILI 197
Query: 234 KVMLEDGRSKGFGFVCFSSPEEATKAV----TEMNGRIVGTK 347
K E ++ GFGF+ +++ + A KAV E +GRI+ K
Sbjct: 198 KGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 35.1 bits (77), Expect = 0.052
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +3
Query: 165 LDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG-------FVCFSSPEEATKAVTEM 323
+DD ++DE + E +GT+T +V++ + F FV FS PEE TKA+ ++
Sbjct: 296 VDDELEDE-VGGECGKYGTVT--RVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDL 352
Query: 324 NGRIVGTKPLYVALAQRKEDRKAHL 398
+GR G + + ++ K L
Sbjct: 353 DGRYFGGRTVRATFYDEEKFSKNEL 377
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 34.7 bits (76), Expect = 0.068
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 150 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 326
L+V N D E + K F P+G +T+ ++ + F FV F + E+ATKA+
Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------RNFSFVQFETQEDATKALEATQ 148
Query: 327 GRIVGTKPLYVALAQRKEDRK 389
+ + + V A + +D +
Sbjct: 149 RSKILDRVVSVEYALKDDDER 169
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 677
PP+PR P ++ RPTTP+ P P + + A + YRP P P Q T
Sbjct: 275 PPSPRS-DPPRLDAPRPTTPK-----PPSPRSVSPRAVQRREIVYRPEPTLPVQHASATK 328
Query: 678 L 680
+
Sbjct: 329 I 329
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = +3
Query: 462 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPST-QAASAYAN 617
P GAS + S PP+PR P T RP +PR A PP RP+T + S A+
Sbjct: 203 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTTPRPPSPLAD 261
Query: 618 MQPTYRPAPRAPAQSTIRT 674
P P P + R+
Sbjct: 262 APRLDAPRPTTPKPPSPRS 280
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 677
PP+PR P ++ RPTTP+ P P + + A + YRP P P Q T
Sbjct: 274 PPSPRS-DPPRLDAPRPTTPK-----PPSPRSVSPRAVQRREIVYRPEPTLPVQHASATK 327
Query: 678 L 680
+
Sbjct: 328 I 328
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = +3
Query: 462 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPST-QAASAYAN 617
P GAS + S PP+PR P T RP +PR A PP RP+T + S A+
Sbjct: 202 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTTPRPPSPLAD 260
Query: 618 MQPTYRPAPRAPAQSTIRT 674
P P P + R+
Sbjct: 261 APRLDAPRPTTPKPPSPRS 279
>At2g15500.1 68415.m01774 hypothetical protein
Length = 132
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 33 EGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 149
+ K V RAQKK+ER+ ELK +EQ E ++Q N
Sbjct: 39 DDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 34.3 bits (75), Expect = 0.090
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
+YV ++D ++ +E L F+ G + ++ + F FV FS + A A++ + G
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS-LGG 188
Query: 330 RIVGTKPLYV 359
++G P+ V
Sbjct: 189 TMIGYYPVRV 198
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
L+V+N++ +++D L F PFG I S + +S+GF + + A A+ +
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISYYDIRAAHAAMRALQN 243
Query: 330 RIVGTKPLYVALAQRKED 383
++ + L + + KE+
Sbjct: 244 TLLRKRTLDIHFSIPKEN 261
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
L+V+N++ +++D L F PFG I S + +S+GF + + A A+ +
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISYYDIRAAHAAMRALQN 256
Query: 330 RIVGTKPLYVALAQRKED 383
++ + L + + KE+
Sbjct: 257 TLLRKRTLDIHFSIPKEN 274
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 323
++V L E L F +G I V+++ G++KGFGFV F + + A +A+ E
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 324 NGRIV 338
RI+
Sbjct: 166 KKRIL 170
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 323
++V L E L F +G I V+++ G++KGFGFV F + + A +A+ E
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 324 NGRIV 338
RI+
Sbjct: 166 KKRIL 170
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Frame = +3
Query: 144 VNLYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEAT 305
V LY+KNL D + D+ + F + AK ++++GR +G F+ F S E A
Sbjct: 352 VVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEVAH 411
Query: 306 KAVTEMNGRIVGTKPLYV 359
+A+ +NG + KP+ +
Sbjct: 412 RALNLVNGFVFKGKPMII 429
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 324 NGRIVGTKPLYVALAQR 374
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 324 NGRIVGTKPLYVALAQR 374
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 323
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 324 NGRIVGTKPLYVALAQR 374
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
+YV +LD + +E+L F G + ++ + F F+ F+ E A A+ ++G
Sbjct: 175 VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTAL-NLSG 233
Query: 330 RIVGTKPLYV 359
++G P+ V
Sbjct: 234 TMLGFYPVKV 243
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
+YV ++D + +E+L F FG + ++ + F F+ F+ E + ++G
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTD-EVGARTALNLSG 210
Query: 330 RIVGTKPLYV 359
++G P+ V
Sbjct: 211 TMLGFYPVKV 220
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 323
+YV + + + L F+ +G I ++ + G +SKGF F+ + AV +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 324 NGRIV 338
NG +V
Sbjct: 98 NGALV 102
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 33.1 bits (72), Expect = 0.21
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +3
Query: 150 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 326
L+V N D ER + + F P+G + + ++ + F FV F++ E+ATKA+ +
Sbjct: 71 LFVINFDPIRTRERDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTH 124
Query: 327 GRIVGTKPLYVALAQR----KEDRKA 392
+ K + V A R +EDR A
Sbjct: 125 NSKLLDKVVSVEYALREAGEREDRYA 150
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 33.1 bits (72), Expect = 0.21
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +3
Query: 150 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 326
L+V N D ER + + F P+G + + ++ + F FV F++ E+ATKA+ +
Sbjct: 97 LFVINFDPIRTRERDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTH 150
Query: 327 GRIVGTKPLYVALAQR----KEDRKA 392
+ K + V A R +EDR A
Sbjct: 151 NSKLLDKVVSVEYALREAGEREDRYA 176
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 314
++YV N+D E +++ F GT+ ++ + G+ KGF +V F E ++
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILN 163
Query: 315 -TEMNGR 332
+E++GR
Sbjct: 164 ESELHGR 170
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/74 (22%), Positives = 39/74 (52%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
+YV ++D+ + +E+L F G + ++ + F F+ F+ E A A+ + +G
Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALRK-SG 197
Query: 330 RIVGTKPLYVALAQ 371
+ G+ P+ V +++
Sbjct: 198 TMFGSHPIRVFMSK 211
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 326
+YV NLD + + L EF FG + + V R G+ F+ F +A A++ ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 326
+YV NLD + + L EF FG + + V R G+ F+ F +A A++ ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEFDDERDALDAISALD 59
>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 427
Score = 32.7 bits (71), Expect = 0.28
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 557 WSCRSYLSHLSWSIVTWCW 501
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 492
Score = 32.7 bits (71), Expect = 0.28
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 557 WSCRSYLSHLSWSIVTWCW 501
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 314
G L+V +L D L E +G + K E G+SKG+ V F P A+
Sbjct: 233 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACK 292
Query: 315 TEMNGRIVGTKPLYVALA 368
+NG +P V A
Sbjct: 293 DALNGYPFNGRPCVVEYA 310
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMN 326
L +N+ T E +R F +G++ ++ M + R++G F+ +SPEEA A+ +
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLE 155
Query: 327 GRIVGTKPLYVALAQRKEDR 386
+ L V A+ K+ +
Sbjct: 156 SCEYEGRRLKVDYAKTKKKK 175
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 323
L+V L ++ LR+ + +G I + +++ + G S+G+GFV + + +E +A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 324 NGRIVGTKPLYV 359
+ ++ + + V
Sbjct: 126 HHSLIDGREIIV 137
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 108 QLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCF 284
Q K E + + V NL ++ F + S ++++ +G+ G+GFV F
Sbjct: 146 QSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEF 205
Query: 285 SSPEEATKAVTEMNG 329
+S A KA+ E NG
Sbjct: 206 ASAYGANKALEEKNG 220
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 204 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 335
F+ G I +++++ G G GFV F+S EA KA+ + G+I
Sbjct: 396 FSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 540 IRPTTPRWNAQPPVRPSTQAASAYANMQPT---YRPAPRAPAQSTIRTSLGARPITGQQG 710
IRP++P + RPST ++ A+ T RP + + R SL +RP T
Sbjct: 191 IRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRPSTPTSR 250
Query: 711 VAAAAAS 731
+A+S
Sbjct: 251 PQLSASS 257
>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
gi:3928758 contains Pfam profile PF04055: radical SAM
domain protein
Length = 374
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 162 NLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS 260
N ++D R+ KE+AP GT+T VML G +
Sbjct: 251 NFKQSLDVLRMAKEYAPAGTLTKTSVMLGCGET 283
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 323
L+V +L +++ L++ F FG + ++ ++ + +G G+V F + +A KA M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 324 NGRIVGTK 347
+G + K
Sbjct: 160 DGAQIDGK 167
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 323
L+V +L +++ L++ F FG + ++ ++ + +G G+V F + +A KA M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 324 NGRIVGTK 347
+G + K
Sbjct: 160 DGAQIDGK 167
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 186 ERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 347
E + F +G I A ++ + RSKG+GFV F + AT+A + I G +
Sbjct: 31 EAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 323
++V L + ++R+ FG + ++ E G SKG+ F + P A +
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 324 NGRIVGTKPLYVALA 368
NG +G K L V A
Sbjct: 437 NGIKMGDKTLTVRRA 451
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 204 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 371
F G + S ++++ + + G+GFV F+SP A A+ + NG + +++ +A+
Sbjct: 702 FNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAK 758
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 132 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKA 311
R G ++Y+K L L EF FG I + + + + FGFV F S A
Sbjct: 308 RALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQKGFCFGFVEFESASSMQSA 367
Query: 312 V 314
+
Sbjct: 368 I 368
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 329
+YV ++D ++ +E L F+ G + ++ + F FV F+ + A +A++ + G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS-LGG 201
Query: 330 RIVGTKPLYV 359
++G P+ V
Sbjct: 202 TMLGFYPVRV 211
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 31.1 bits (67), Expect = 0.84
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQM-TQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 665
P +PP P Y PAQ+ + + PT PP RP Q + AN Q P +
Sbjct: 50 PLVPPGPPYAPPAQIPSSLLPT--NLPPPPPFRPGMQ-FTPVANFQNPSSGVPPPGSMPQ 106
Query: 666 IRTSLGARPITGQQGVAAAAASIRPP 743
+ G RP + PP
Sbjct: 107 YQPQPGMRPFQPMANGYPGIHGVAPP 132
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQS 662
PPAP P P P PP++PS A S AN P P P ++
Sbjct: 155 PPAPPASDPTNSPPASPLDP--TNPPPIQPSGPATSPPANPNAPPSPFPTVPPKT 207
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +3
Query: 492 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 626
S PP P + P T RP P + P P QAA+ Y P
Sbjct: 151 SPPPPPVLFSPPPPTVTRPPPPPTITRSPPPPRPQAAAYYKKTPP 195
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/82 (28%), Positives = 29/82 (35%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 677
PP P P T +P P N QPP P + + A P P P P S +T+
Sbjct: 46 PPQPDPQPPTPPT-FQPAPPA-NDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTT 103
Query: 678 LGARPITGQQGVAAAAASIRPP 743
P A + PP
Sbjct: 104 PPPPPAITPPPPPAITPPLSPP 125
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQMTQ-IRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 665
PS+ P+P P+ + PTTP PP P+T PT +P S
Sbjct: 452 PSIVPSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSP 511
Query: 666 IRTSLGARP 692
S G P
Sbjct: 512 TTPSPGGSP 520
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +3
Query: 486 VPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPS---TQAASAYANMQPTYRPAPRAPA 656
VPS P P G I P+ P PP PS + + + P+ P+P +P
Sbjct: 410 VPSPPTTPSPGGSPPSPSISPSPPITVPSPPTTPSPGGSPPSPSIVPSPPSTTPSPGSPP 469
Query: 657 QSTIRTSLGARP 692
S + G P
Sbjct: 470 TSPTTPTPGGSP 481
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/64 (26%), Positives = 23/64 (35%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 668
PS P P G I P+ P PP P++ + + P P P ST
Sbjct: 508 PSSPTTPSPGGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPSSPTPSSPIPSPPTPSTP 567
Query: 669 RTSL 680
T +
Sbjct: 568 PTPI 571
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +3
Query: 462 PSGASGFFVPSLPP-APRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 638
PS S P PP +P P PTTP PP P+T PT P
Sbjct: 456 PSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPT-TP 514
Query: 639 AP 644
+P
Sbjct: 515 SP 516
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQ 659
P PR+ A Q T R++ Q P +P + + N QPT R P+ P+Q
Sbjct: 346 PQRPRFSNQAPNQQ---PTGRFDPQSPNQPPSAPRPQFPNQQPTGRFDPQFPSQ 396
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 459 QPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 638
QP+G PS PP P++ A Q +T R+N Q P + + S + + P +P
Sbjct: 384 QPTGRFDPQFPSQPPRPQFPNQAPNQQ---STGRFNPQFPNQRPSPPQSRFPDQAPNQQP 440
Query: 639 APRAP 653
+ +P
Sbjct: 441 SGPSP 445
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Frame = +3
Query: 459 QPSGASGFFVPSLP-PAPRYYGPAQMTQ----IRPTTPRWNAQPPVRPSTQAASAYANMQ 623
QPSG S P P PR+ A Q P P PP RP T+ + +N Q
Sbjct: 439 QPSGPSPNRHPDRQGPPPRFQNQAPNQQPTGRFEPQPPNPPRAPP-RPQTRLPNETSNEQ 497
Query: 624 PTYRPAPRAPA 656
PT PA
Sbjct: 498 PTAPGRSSGPA 508
>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 371
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 500 SSTTLLWTSSNDSNKTYNSKVECTAPCKA*HTSSICICKYATHLQTSTESS 652
SS++ L +S+D N T ++ C P S++ CK+ HLQ E S
Sbjct: 27 SSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWS 77
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFG-----TITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 314
LY+KNL I ERL+ F G I AK ED R +GFV ++ +A+
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSR---YGFVHYAERTSVMRAL 326
Query: 315 TEMNGRIVGTKPLYVALAQRKEDRKAH 395
+ L LA+ + D+K +
Sbjct: 327 KNTERYEIDGHMLDCTLAKPQADQKTN 353
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +3
Query: 456 FQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYR 635
F + +F S PP ++Y P + + P + + PPV S + + P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYK 76
Query: 636 PAP 644
P
Sbjct: 77 SPP 79
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 492 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 644
S PP ++Y P + + P + + PPV S Y + P Y+ P
Sbjct: 45 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPP 95
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +3
Query: 456 FQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYR 635
F + +F S PP ++Y P + + P + + PPV S + + P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYK 76
Query: 636 PAP 644
P
Sbjct: 77 SPP 79
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 492 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 644
S PP ++Y P + + P + + PPV S Y + P Y+ P
Sbjct: 45 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPP 95
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 25.8 bits (54), Expect(2) = 1.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 710 SCCCCCIYSSTFSISK 757
SCCCCC S+ S K
Sbjct: 51 SCCCCCSTPSSSSFVK 66
Score = 22.6 bits (46), Expect(2) = 1.7
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 701 TARSCCCCC 727
++RS CCCC
Sbjct: 47 SSRSSCCCC 55
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/70 (30%), Positives = 26/70 (37%)
Frame = +3
Query: 468 GASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 647
GAS +L R P + +P PR PP P S + P PAP
Sbjct: 658 GASDNVASNLGQPARSPPPISNSDKKPALPR--PPPPPPPPPMQHSTVTKVPPPPPPAPP 715
Query: 648 APAQSTIRTS 677
AP + TS
Sbjct: 716 APPTPIVHTS 725
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 150 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR 257
LYV L+ I ++ + F +G + S +VM EDG+
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAEDGK 262
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 489 PSLPPA-PRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 665
P+ PP+ P + P Q + PT QPP +P TQ + + PT P P P+QS
Sbjct: 24 PTRPPSQPPSHPPIQPSSQPPT------QPPSQPPTQPPTQPPSHPPTQPPTP-PPSQSP 76
Query: 666 IRTS 677
+ S
Sbjct: 77 SQPS 80
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQ-PTYRPAPRAP 653
P PP P P + ++P TP+ P V+P + + + + PT +P P+ P
Sbjct: 43 PVKPPKPPAVKPPKPPAVKPPTPK---PPTVKPHPKPPTVKPHPKPPTVKPHPKPP 95
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 135 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 314
+Q NL+V +L + L + F +G I V S+GF F+ + EEA A
Sbjct: 15 FQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVY----SSRGFAFIYYRHVEEAVAAK 70
Query: 315 TEMNG-RIVGTKPL 353
+ G + GT L
Sbjct: 71 EALQGANLNGTNEL 84
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +3
Query: 495 LPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP--TYRPAPRAPAQSTI 668
+PP PR+ P+ RP+TP +++ P P P + RP P P+ S
Sbjct: 191 IPPPPRHL-PSPPASERPSTPPSDSEHPSPPPPGHPKRREQPPPPGSKRPTPSPPSPSDS 249
Query: 669 RTSLGARPITGQQGVAAAAASIRPPLVSQSS 761
+ + P + + PL S SS
Sbjct: 250 KRPVHPSPPSPPEETLPPPKPSPDPLPSNSS 280
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 644
P PP P Y P P P ++ PP P Y+ P+ P P
Sbjct: 440 PPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPP 491
>At2g38250.1 68415.m04697 DNA-binding protein-related contains
similarity to DNA-binding protein GI:170271 from
[Nicotiana tabacum]
Length = 289
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +3
Query: 57 RAQKKAERQKELKRKFEQLKSERL 128
R +++AE+++E +RK E+L+ ERL
Sbjct: 225 REKERAEKEEEWRRKMEELEKERL 248
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 626
PP+P YY P + P+TP PP P+ Y + P
Sbjct: 735 PPSPVYYPPVTQSPPPPSTP-VEYHPPASPNQSPPPEYQSPPP 776
>At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) /
cyclin-dependent kinase inhibitor 7 (ICK7) identical to
cyclin-dependent kinase inhibitor 7 (krp7) [Arabidopsis
thaliana] GI:14422297
Length = 195
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +3
Query: 108 QLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 287
+ K +R + Y+G N+ LDD DD+ LR + +S+ + S GF V S
Sbjct: 3 ETKPKRDSEYEGSNIKRMRLDD--DDDVLRSPTRTLSSSSSSSLAYSVSDSGGFCSVALS 60
Query: 288 SPEE 299
E+
Sbjct: 61 EEED 64
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/84 (26%), Positives = 34/84 (40%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 668
P++ P P P+Q + P +A PP T A + PT P P P ++
Sbjct: 28 PTISPLPATPTPSQSPRATAPAPSPSANPPPSAPTTAPP--VSQPPTESP-PAPPTSTSP 84
Query: 669 RTSLGARPITGQQGVAAAAASIRP 740
+ G +G+ G A + S P
Sbjct: 85 SGAPGTNVPSGEAGPAQSPLSGSP 108
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 141 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSS 290
G ++YV+NL +L + F FG I + + + +G FGFV F +
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFET 343
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML---EDGRSKGFGFVCF---SSPEEATK 308
++YV+NL I + +EF FGTI V L +D + FV F +S E A K
Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317
Query: 309 A 311
A
Sbjct: 318 A 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +3
Query: 147 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML---EDGRSKGFGFVCF---SSPEEATK 308
++YV+NL I + +EF FGTI V L +D + FV F +S E A K
Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376
Query: 309 A 311
A
Sbjct: 377 A 377
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 255 RSKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 386
+S+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 53
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 29.1 bits (62), Expect = 3.4
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = +3
Query: 456 FQPSGASGFFVPSLPPA--PRYYGP---AQMTQIRPTTPRWNAQPPVRPSTQAASAYANM 620
F AS F + PP P+ GP ++ RP TP +A P RP T + A
Sbjct: 11 FPARPASSPFASAPPPGIPPQSGGPPTGSEAVGFRPFTP--SASQPTRPFTASGPPPAPP 68
Query: 621 QPTYRPAPRAPAQSTIRTSLGARP 692
T RP +P S I G+RP
Sbjct: 69 VGTMRPGQPSPFVSQIP---GSRP 89
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +3
Query: 483 FVPSLPPAPRYYGPAQMTQIRPTTPRW---NAQPPVRPSTQAASAYANMQPTY-RPAPRA 650
+V S PP P YY P+ + + P + + PP S Y + P Y +P
Sbjct: 815 YVYSSPPPPTYYSPSPKVEYKSPPPPYVYNSPPPPAYYSPSPKIEYKSPPPPYVYSSPPP 874
Query: 651 PAQS 662
P+ S
Sbjct: 875 PSYS 878
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +3
Query: 483 FVPSLPPAPRYYGPAQMTQIRPTTPR--WNAQPPVRPSTQAASAYANMQPTY 632
+V S PP P YY P+ + + P +++ PP S Y + P Y
Sbjct: 738 YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPPPY 789
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = +3
Query: 483 FVPSLPPAPRYYGPAQMTQIRPTTPRW---NAQPPVRPSTQAASAYANMQPTY-RPAPRA 650
+V S PP P YY P+ + + P + + PP S Y + P Y +P
Sbjct: 789 YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPTYYSPSPKVEYKSPPPPYVYNSPPP 848
Query: 651 PA 656
PA
Sbjct: 849 PA 850
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 28.7 bits (61), Expect = 4.5
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Frame = +3
Query: 57 RAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL---RKEFAPFGTIT 227
R + + + K + + +QL S R+ + V Y+ L + DE L ++ F +G +
Sbjct: 41 RKKIQKSKSKSSEGRKQQLTSVRVIQRNLV--YIVGLPLNLADEDLLQHKEYFGQYGKVL 98
Query: 228 ------SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 377
+A V L D ++ + EEA + + ++G I+ KPL K
Sbjct: 99 KVSMSRTASVKLSDNDFLHRRYITYGKEEEAVRCIQAVHGFILDGKPLKACFGTTK 154
>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
calcium-dependent protein kinase [Dunaliella
tertiolecta] GI:6644464; contains Pfam profile PF00168:
C2 domain
Length = 247
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 459 QPSG---ASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 629
QPSG ASG+ PP P Y P T P P +A PP PS+ QP+
Sbjct: 180 QPSGYPPASGY-----PPQPSAYPPPS-TSGYPPIP--SAYPPPPPSSAYPPQPYPPQPS 231
Query: 630 YRPAPRAPAQ 659
Y P P Q
Sbjct: 232 YYPQGPYPGQ 241
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP-AQST 665
P+ P P P + + PTT PP P + + + ++ T PAP AP + ST
Sbjct: 195 PATSP-PGSMAPKSGSPVSPTT-----SPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSST 248
Query: 666 IRTSLGARPITGQQGVAAAAAS 731
I S + P+T G A +S
Sbjct: 249 IPPS--SAPMTSPPGSMAPKSS 268
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 28.7 bits (61), Expect = 4.5
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +3
Query: 495 LPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP-AQSTIR 671
LPPAP Y + P + PP PS A + +P P PR P +S
Sbjct: 226 LPPAPVY----------SSNPMVRSSPPGHPSPSAHLEEMSNRPPLHPQPRVPVTRSNSA 275
Query: 672 TSLGARPITGQQGVAAAAASIRPPLVSQSSR 764
G+RP + + +S+ LV SSR
Sbjct: 276 KVSGSRPRKYHKRTNSELSSM---LVGDSSR 303
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +3
Query: 489 PSLPPAPRYYG---PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQ 659
P PP+P PA Q P P PP PS+ S P P P+ P Q
Sbjct: 48 PPSPPSPDTQTSPPPATAAQPPPNQPPNTTPPPTPPSSPPPSI---TPPPSPPQPQPPPQ 104
Query: 660 ST 665
ST
Sbjct: 105 ST 106
>At1g06760.1 68414.m00718 histone H1, putative similar to histone
H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana];
identical to cDNA H1-1C mRNA for histone H1-1 (partial)
GI:732560
Length = 274
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 579 VRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARP-ITGQQGVAAAAASIRPP 743
V+P T AA + +P PRA A +T R ++ A+P + AA A + P
Sbjct: 176 VKPKTAAAKK-VTAKAKAKPVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSP 230
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 522 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 653
PA RP PR +A P P A +YA + ++ P P P
Sbjct: 334 PANFYTSRPHAPRSHAPPTYAPRPHAPRSYAPIN-SHLPRPNIP 376
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 21 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 149
K+ ++ Y QK+ + K+K E + ER+T+ QG N
Sbjct: 508 KQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERITKLQGEN 550
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 653
PP P P PTTP + PPV+P T PT P + P
Sbjct: 126 PPTPTVKPPTTSPVKPPTTPPVQS-PPVQPPTYKPPTSPVKPPTTTPPVKPP 176
>At5g07820.1 68418.m00896 expressed protein
Length = 561
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 486 VPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 647
+PSLPP + IR TT R P + + +A+ N +P + P+
Sbjct: 354 LPSLPPPSEVVTGSDPRPIRQTTSRSKTSLPEKKQSGSANLVTNPKPESKIRPK 407
>At4g35870.1 68417.m05094 expressed protein
Length = 817
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 180 DDERLRKEFAPFGTITSAKVMLEDGRSKGFG--FVCFSSPEEATKAVTE 320
DDE+LRK + S ++GR++G G FV F A KAV +
Sbjct: 311 DDEKLRKLQELRADLESQLAAYKEGRAQGAGVAFVMFKDVYTANKAVQD 359
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/66 (30%), Positives = 25/66 (37%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 668
P PP P Y P T ++P P PP P+ +A P Y P P+
Sbjct: 127 PYTPPPPTPYTPPPPT-VKPPPPPVVTPPPPTPTPEAPCPPPPPTP-YPPPPKPETCPID 184
Query: 669 RTSLGA 686
LGA
Sbjct: 185 ALKLGA 190
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 156 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 314
VKNL + F FG I V + + RS +GFV F A +A+
Sbjct: 1080 VKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFKEENAAQRAI 1132
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Frame = +3
Query: 531 MTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQS---------TIRTSLG 683
++QI+P++P A+P PS A + A PT R P P+ +RT+L
Sbjct: 335 ISQIKPSSPA-PAKPMPTPSKNPALSRA-ASPTVRSRPWKPSDMPGFSLETPPNLRTTLP 392
Query: 684 ARPITGQQGVAAAAAS 731
RP++ +G A +S
Sbjct: 393 ERPLSATRGRPGAPSS 408
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Frame = +3
Query: 489 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANM-QPTYR------PAPR 647
P P P P ++ T A P VR ++ +S+ N P + P
Sbjct: 195 PGKPSGPVSRSPTPTSRRMSTGSTTMASPAVRGTSPVSSSRGNSPSPKIKVWQSNIPGFS 254
Query: 648 APAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSR 764
A +RTSLG RP + +G + A+ + R + ++S +
Sbjct: 255 LDAPPNLRTSLGDRPASYVRGSSPASRNGRDAVSTRSRK 293
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASA-YANMQPTYRPAPRAP 653
PP P P T P PR PPV A A +A +QP P P P
Sbjct: 249 PPPPPVVDPPPATHRAPPVPR---IPPVSGVPPAPFAPFAPLQPQQHPPPSPP 298
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 27.9 bits (59), Expect = 7.8
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Frame = +3
Query: 33 EGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP 212
EG Y RA KR E+ K E Y V L ++ L +++ ++ + F+
Sbjct: 168 EGAYEYEVRASPPPTGPSRAKRFSEKEKLE----YTEV-LKMRGLPYSVNKPQIIEFFSG 222
Query: 213 FGTITSAK--VMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 386
+ I V DG++ G FV F + EEA +A+ + + +G++ + + R+E R
Sbjct: 223 YKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAK-DKMSIGSRYVELFPTTREEAR 281
Query: 387 KA 392
+A
Sbjct: 282 RA 283
>At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 513
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/88 (25%), Positives = 32/88 (36%)
Frame = +3
Query: 480 FFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQ 659
+ +PS P+P Y+ P P P+ +P + Y +Q R P Q
Sbjct: 342 YMIPSPSPSPVYHAPP------PPQPQGVIRPILTGQVNQGGYYPQVQRVASDTYREPHQ 395
Query: 660 STIRTSLGARPITGQQGVAAAAASIRPP 743
S A+P+ G AA PP
Sbjct: 396 SPYNV---AQPLQAPIGTKAAQQQQPPP 420
>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 689
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +3
Query: 498 PPAPRYYGPAQMTQIR-PTTPR-WNAQPPVRPSTQAASAYANMQPTY 632
PP P YY P+ + P P +N+ PP S Y + P Y
Sbjct: 86 PPPPSYYSPSPKVNYKSPPPPNVYNSPPPPYYSPSPKVDYKSPPPPY 132
>At4g27370.1 68417.m03929 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1126
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 21 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 161
K LVE K + ++ AE + LK +FE+ K + TR + V+
Sbjct: 1063 KSLVEVKSDSISNRKQHAEELRRLKSRFEKWKKDYKTRLRETKARVR 1109
>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
similar to SP|Q40374 Pathogenesis-related protein PR-1
precursor {Medicago truncatula}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 210
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Frame = +3
Query: 513 YYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQ------STIRT 674
YY I P+ P + A+P P+ PTY+P + Q +T+R
Sbjct: 28 YYRHRPQRPITPSPPPYVAKPQPLPTPSPKPILYQPPPTYQPPTGSFEQQFLDPHNTVRG 87
Query: 675 SLGARPITGQQGVAAAA 725
LG P+ +A+ A
Sbjct: 88 GLGLPPLVWDVKIASYA 104
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +3
Query: 483 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRP--STQAASAYANMQPTY 632
+V S PP P YY P+ + P P + PP P S Y + P Y
Sbjct: 206 YVYSFPPPPPYYSPSPKVGYKSPPAPYVYSSPPPPPYYSPSPKVNYKSPPPPY 258
>At4g12440.2 68417.m01969 adenine phosphoribosyltransferase,
putative strong similarity to SP|P31166 Adenine
phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT)
{Arabidopsis thaliana}; contains Pfam profile PF00156:
Phosphoribosyl transferase domain
Length = 182
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 9 ELNGKELVEGKPLYV 53
EL G+E +EGKPLYV
Sbjct: 163 ELKGRERLEGKPLYV 177
>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1018
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 483 FVPSLPPAPRYYGPAQMTQIRPTTPR--WNAQPPVRPSTQAASAYANMQPT-YRPAPRAP 653
+V S PP P YY PA + P +++ PP S Y + P Y P+P+
Sbjct: 934 YVYSSPPPP-YYSPAPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYYSPSPKVD 992
Query: 654 AQS 662
+S
Sbjct: 993 YKS 995
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,071
Number of Sequences: 28952
Number of extensions: 324879
Number of successful extensions: 1998
Number of sequences better than 10.0: 255
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1871
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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