Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0702
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         31   0.21 
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    29   0.84 

>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 190 CISRSFVISMEF*LINCNTY*YEINYLIKKQICCSNTSWTVSELV 56
           C +  F++   F LI CN+    + YLI   +  S+T W    L+
Sbjct: 109 CCAYQFILRNRFLLIWCNSETIHLTYLIDTVVIESSTFWCTGSLI 153


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -3

Query: 624 PFSQRLKKFDKTS*QDRESFFK*INGIRFLKPRSFQLKIF*YDRNSGNIPFPILLVQPSI 445
           P SQ L +F   S   +E+     + +    PRS  L  F  D N+ N P   LL    +
Sbjct: 188 PSSQPLDRFSPASFPSKETLTS--SSLSSSVPRSVSLSNF-ADSNTSNYPESSLLPAAKV 244

Query: 444 DNNG 433
            NNG
Sbjct: 245 GNNG 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,328
Number of Sequences: 5004
Number of extensions: 47577
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)