Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0702
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 42 6e-04
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37) 42 6e-04
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4) 42 6e-04
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 42 6e-04
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5) 42 6e-04
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 42 6e-04
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8) 39 0.004
SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5) 38 0.010
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6) 37 0.014
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.072
SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_24487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 10 RRPVNCNTTHYRANW 24
>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 66 RRPVNCNTTHYRANW 80
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 634 RRPVNCNTTHYRANW 648
>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 45 RRPVNCNTTHYRANW 59
>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
Length = 257
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 7 RRPVNCNTTHYRANW 21
>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
Length = 117
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 47 RRPVNCNTTHYRANW 61
>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 1885 RRPVNCNTTHYRANW 1899
>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 45 RRPVNCNTTHYRANW 59
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 7 RRPVNCNTTHYRANW 21
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 39 RRPVNCNTTHYRANW 53
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 88 RRPVNCNTTHYRANW 102
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 66 RRPVNCNTTHYRANW 80
>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
Length = 281
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 77 RRPVNCNTTHYRANW 91
>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 53 RRPVNCNTTHYRANW 67
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 41.5 bits (93), Expect = 6e-04
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRANW 651
RRPVNCNTTHYRANW
Sbjct: 77 RRPVNCNTTHYRANW 91
>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
Length = 142
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +3
Query: 630 TRGGARYPIRPIVSRITIHWPS 695
T GGA PIRPIVSRITIHWP+
Sbjct: 34 TDGGA--PIRPIVSRITIHWPA 53
>SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)
Length = 131
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/22 (81%), Positives = 18/22 (81%)
Frame = +3
Query: 630 TRGGARYPIRPIVSRITIHWPS 695
T GGA PIRPIVS ITIHWPS
Sbjct: 36 TVGGA--PIRPIVSHITIHWPS 55
>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 237
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRAN 654
RRPVNCNTTHYRAN
Sbjct: 84 RRPVNCNTTHYRAN 97
>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -1
Query: 695 RRPVNCNTTHYRAN 654
RRPVNCNTTHYRAN
Sbjct: 27 RRPVNCNTTHYRAN 40
>SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 34.7 bits (76), Expect = 0.072
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3
Query: 654 IRPIVSRITIHWPS 695
IRPIVSRITIHWPS
Sbjct: 18 IRPIVSRITIHWPS 31
>SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 654 IRPIVSRITIHWPS 695
+RP+VSRITIHW S
Sbjct: 33 LRPVVSRITIHWTS 46
>SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -2
Query: 676 IRLTIGRIGYRAPPRVNSIFSTTKEV*QNLVTRPRIFF*INKWYSIFKTKE 524
++LT G +G+ A P+ +F+TTK+ N+ P F ++ + + TK+
Sbjct: 574 LKLTDGLLGHNALPKEEEVFATTKD--DNIQAPPGRLFYLSHFPTYHNTKK 622
>SB_24487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 660 PIVSRITIHWPS 695
P +SRITIHWPS
Sbjct: 77 PYMSRITIHWPS 88
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,666,555
Number of Sequences: 59808
Number of extensions: 314572
Number of successful extensions: 466
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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