Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0702
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46266-9|CAO78710.1|  790|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z46266-4|CAA86414.2|  787|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AB011285-1|BAA24965.1|  275|Caenorhabditis elegans GAP-2-9 protein.    29   2.4  
AC006673-13|AAF39922.1|  295|Caenorhabditis elegans Hypothetical...    28   5.5  

>Z46266-9|CAO78710.1|  790|Caenorhabditis elegans Hypothetical
           protein ZK899.8j protein.
          Length = 790

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 492 NSGNIPFPILLVQPSIDNNGRYFD*INIIMLNEIKNEI-QFQISKN 358
           NS  IP+ +  + PSI+N    F   N  + N +KN I  F++ KN
Sbjct: 14  NSSMIPYSLASIYPSIENLPEEFSNENNKIKNVLKNFIWSFKLKKN 59


>Z46266-4|CAA86414.2|  787|Caenorhabditis elegans Hypothetical
           protein ZK899.8g protein.
          Length = 787

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 492 NSGNIPFPILLVQPSIDNNGRYFD*INIIMLNEIKNEI-QFQISKN 358
           NS  IP+ +  + PSI+N    F   N  + N +KN I  F++ KN
Sbjct: 14  NSSMIPYSLASIYPSIENLPEEFSNENNKIKNVLKNFIWSFKLKKN 59


>AB011285-1|BAA24965.1|  275|Caenorhabditis elegans GAP-2-9 protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 492 NSGNIPFPILLVQPSIDNNGRYFD*INIIMLNEIKNEI-QFQISKN 358
           NS  IP+ +  + PSI+N    F   N  + N +KN I  F++ KN
Sbjct: 14  NSSMIPYSLASIYPSIENLPEEFSNENNKIKNVLKNFIWSFKLKKN 59


>AC006673-13|AAF39922.1|  295|Caenorhabditis elegans Hypothetical
           protein K09D9.1 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 483 FHCSCHIKIFLIENSLVLKIEYHL 554
           F+  CH+K+  IE +LVL   YH+
Sbjct: 22  FNAGCHMKMRYIETNLVLLKTYHM 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,663,561
Number of Sequences: 27780
Number of extensions: 252896
Number of successful extensions: 444
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)