Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0702
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80540.1 68414.m09441 expressed protein ; expression supporte...    29   3.9  
At2g43480.1 68415.m05403 peroxidase, putative similar to peroxid...    27   9.0  

>At1g80540.1 68414.m09441 expressed protein ; expression supported
           by MPSS
          Length = 481

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 54  LTNSETVHEVFEQQICFLIK*LISYQYVLQLIN*NSIEITN-DLLIQFCTINIILFVLVS 230
           ++N      V  Q I +L   L   +YVL +I    + +    LL  FC + ++++++V+
Sbjct: 199 MSNITYPDRVANQTIRYLTGALNPVRYVLNVIAGVMLAVAFLGLLFSFCGLRVLVYLVVA 258

Query: 231 NSSYSMDEF 257
           ++  +MD++
Sbjct: 259 DTCMAMDQW 267


>At2g43480.1 68415.m05403 peroxidase, putative similar to
           peroxidase; peroxidase ATP14a [Arabidopsis thaliana]
           gi|1546690|emb|CAA67335
          Length = 335

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 548 PFIYLKKDSRSCHEVLSNFFSR 613
           P +YL  DS S H   S+F+SR
Sbjct: 248 PLVYLNPDSGSNHSFTSSFYSR 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,535,211
Number of Sequences: 28952
Number of extensions: 221939
Number of successful extensions: 343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)