Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0700
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    28   1.4  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    27   4.2  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   7.4  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 434 IYKNIFSECLKFTKNNGSY 490
           I+KN+F E L F K+N SY
Sbjct: 753 IFKNLFPEVLSFVKSNHSY 771


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 160 FFLYFLLLRCVDKLTGHL 213
           +F Y L+ R +DKL GHL
Sbjct: 306 YFAYALMQRAIDKLYGHL 323


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 198 AHRPPSVKWLLEPIDIYNVNAPPTLR 275
           A +PPS+K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 687  QS*SEAIKYFILSILNNIRH*IGNLQGTMHLA--QHYDIRYYV 565
            +S S   + FILS+L  +   +  L GT+ L+  QHY +  +V
Sbjct: 888  RSPSSTYRSFILSLLQMLEFLLSRLDGTIDLSSEQHYLLSNFV 930


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,449
Number of Sequences: 5004
Number of extensions: 60728
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)