Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0700
         (820 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein ...    28   0.30 
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   3.7  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   8.6  

>AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein S26
           protein.
          Length = 114

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 302 YNGY--PTLQTETHYCFTAEIGRVVVPTGADSQ*SILTSPQRKAPQ 433
           Y+ Y  P L  + HYC +  I   VV   +     I T PQR  P+
Sbjct: 58  YSSYVLPKLYAKLHYCVSCAIHSKVVRNRSKETRRIRTPPQRSFPK 103


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 404 LTSPQRKAPQIYKNIFSECL 463
           LT+  RK   I+K +F ECL
Sbjct: 447 LTAAIRKHTDIFKKLFQECL 466


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 363 GWWYLQVRTHNKVFLRVRREKPLRFTRTSFQNV 461
           G W L   TH K   R  R   LR   ++FQ V
Sbjct: 791 GRWVLDKETHRKSVQRAHRPGALR-VASAFQTV 822


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 784,010
Number of Sequences: 2352
Number of extensions: 15078
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86902827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)