Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0700
         (820 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65950.1 68414.m07483 ABC1 family protein contains Pfam domai...    30   1.6  
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa...    28   6.5  

>At1g65950.1 68414.m07483 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 551

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 319 PSNRNALLLHGRNRQGGGTYRCGLTIK-YSYESAEKSPSDLQEHLFRMFKVH 471
           PSN+ A  + G  R     Y   LT+  Y Y +  + P+D  E+L R+ +VH
Sbjct: 45  PSNKIATAVEGVVRSSRAIYSITLTVADYKY-TLRRLPADSDEYLQRLTEVH 95


>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 199

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 328 RNALLLHGRNRQGGGTYRCGLT-IKYSYESAEKSPSDL 438
           R  + L G  R+ G    CG T ++  YE+ E SP DL
Sbjct: 16  RRGIHLQGEGRREGACIYCGNTFLERLYENVELSPFDL 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,682,572
Number of Sequences: 28952
Number of extensions: 311102
Number of successful extensions: 527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)