Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0699
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)                  37   0.011
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.32 
SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)                    31   0.56 
SB_41914| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)                   29   3.9  
SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  28   5.2  
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  
SB_31110| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
          Length = 822

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 24/65 (36%), Positives = 33/65 (50%)
 Frame = +3

Query: 81  SKLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPR 260
           SKLVK  Y   L    +  +KP   Q +SS+  DDEI  TE+  I++T T    +   PR
Sbjct: 15  SKLVKQRYRTELRSRILASIKPEISQALSSLL-DDEIHGTEEEKIMRTATRSFTKGLKPR 73

Query: 261 LAKDP 275
            +  P
Sbjct: 74  SSTHP 78


>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1429

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +3

Query: 84  KLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRL 263
           KLVK  Y   L   ++  +KP   Q +S +   DEI  TE+  I++T T    +   PR 
Sbjct: 460 KLVKRRYGTELRSRTLALIKPEISQALSLLL--DEIHGTEEAKIMRTATQSFTKGPKPRS 517

Query: 264 AKDP 275
           +  P
Sbjct: 518 STHP 521


>SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)
          Length = 348

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 204 DLSIVKTGTVEDDESADPRLAKDPAYEMFDK--VDKFLQSHTLRVKVPEEITKSAASEYV 377
           D+SIV  G V D   +DPR+ KDP  ++F    VD FL      + VP+ +  S   +  
Sbjct: 34  DVSIVLNGAVAD---SDPRVLKDPKRKVFKTGGVDAFL------LTVPQSLDPSEEMKEA 84

Query: 378 PRSLLTDLP 404
           P++    +P
Sbjct: 85  PKTKKEGIP 93


>SB_41914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 175 PTTTKLRSLKIFLS*RPEQLRMMNLPTLDWPRIRPTK 285
           PT  KL+++    + RP+ L + + P  DWP +R T+
Sbjct: 5   PTGRKLQAVLHNNAIRPQSLTLCHQPNCDWPTVRLTQ 41


>SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 159 WMSSVANDDEIKITEDLSIVKTGTVEDD 242
           W++ V N+D +K+TE+ S+V   T + D
Sbjct: 3   WINVVDNEDLVKLTEESSVVILATYDGD 30


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 318  HTLRVKVPEEITKSAASEYVPRSLLTDL-PSELD 416
            H   + V  + +++AA +YVPR++L DL P+ +D
Sbjct: 954  HCKEIGVGSKTSEAAAGKYVPRAVLVDLEPTVID 987


>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
          Length = 999

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 300 DKFLQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGEDE 440
           +K   SH  + K     +  A  E +   L    P+ELD+P D EDE
Sbjct: 155 NKASASHYTQKKTTGSSSTEALREDISYMLEAVTPAELDVPTDNEDE 201


>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 24/97 (24%), Positives = 37/97 (38%)
 Frame = +3

Query: 165 SSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPE 344
           S   N+D++  T D    K  T  DD+        D   E F++++K           P 
Sbjct: 323 SQTVNEDKVPTTNDDDEDKASTTNDDDQDKASTTND--NEEFEEIEK---------NPPV 371

Query: 345 EITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEVVE 455
           E  +   SE   + LL  +  E   P   ED+ +  E
Sbjct: 372 EPAEYTISEEKRKDLLRQIIEEESTPSSDEDDGDYEE 408


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 171 VANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAY-EMFDKVDKFL 311
           + +DD+I   +D++     T EDD +++  +  +PA  E+ D+ ++ L
Sbjct: 114 ITSDDDITSDDDITSDDDITSEDDITSEDNITTEPAIKEVIDRANELL 161


>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/97 (20%), Positives = 34/97 (35%)
 Frame = +3

Query: 165 SSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPE 344
           S   N+D++  T D    K  T  DD+        D   +     +   +   +    P 
Sbjct: 79  SQTVNEDKVPTTNDDDEDKASTTNDDDKDKASTTNDDDQDKASTTNDNEEFGEIEKNPPV 138

Query: 345 EITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEVVE 455
           E  +   SE   + LL  +  E   P   +D+ +  E
Sbjct: 139 EPAEYPISEDKRKDLLRQIIEEERTPSSDDDDGDYEE 175


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 232 TVPVFTIERSSVILISSSLATDDIHCRVLGFTHSTEYWLR 113
           T PV T++ S ++  +S     D+ CR  G      YWL+
Sbjct: 790 TKPVITLDPSDIV--ASRNQPTDLRCRATGSPKPKIYWLK 827


>SB_31110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 42  LSIVAFASATYPA-SKLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIV 218
           L ++ +    +P+  +LVK  Y   L   S+  +KP   Q +SS+   +EI+ ++D  I+
Sbjct: 75  LIVLTWLRLIHPSLPRLVKQRYGTELRSRSLASIKPEISQALSSLL--EEIRTSDDAKIL 132

Query: 219 KT 224
           ++
Sbjct: 133 RS 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,939,107
Number of Sequences: 59808
Number of extensions: 358977
Number of successful extensions: 1030
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)