Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0698
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11) 31 0.58
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 29 3.1
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 28 7.2
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 7.2
SB_1374| Best HMM Match : PAN (HMM E-Value=0.013) 27 9.5
>SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)
Length = 439
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 511 RCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARS 410
+CD G H C++ +G K TCD G ++VG S
Sbjct: 76 KCDGCG-HGSCQISAGKKSCTCDYGWLNNVGDAS 108
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/80 (30%), Positives = 34/80 (42%)
Frame = +2
Query: 293 TPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATT 472
TP T S P + + I +P P ++ PS+ TP+T S P +T
Sbjct: 26 TPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTPCTHSTPSAPSTPST--PSTPCTPST 83
Query: 473 YTTPFVQTVPIASTASLPVA 532
+TP + P ST S P A
Sbjct: 84 PSTPSTPSTP--STPSTPSA 101
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 365 HFIKKRSPQWPVSYIAPSSYITPNT-YIASGPLGATTYTTPFVQTVPIA-STASLP 526
H +K +P P + PS+ TP+T S P T +TP + PI ST S P
Sbjct: 5 HRLKLSTPSTPCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTP 60
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 384 LHNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPSQ 533
LH+ T+LL P ++ P Q LL+P+ P + S HH+ ++
Sbjct: 668 LHHQNHNTTLLQPVTITPPKPQHTLLQPVTITPPKPQHNTSTTSHHYTTK 717
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 410 APSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPV 529
APSS +T +GP TT P V T+ +TA+ P+
Sbjct: 804 APSSNPNESTTPTTGPTTGTTALPPGVTTITTPATATTPL 843
>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 390 NGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRS 506
N P + LL LPT Q+ L +P P PS P RS
Sbjct: 278 NTPFVSRLLLALVLPTMHLQLLLTKPTPATPPSRAPTRS 316
>SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 275 TTYHGKTPLLASTSYVSSIP 334
T YHG TP ST Y SIP
Sbjct: 387 TPYHGSTPYRGSTPYRGSIP 406
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 377 KRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 526
K++ PVS ++ TP + P T TP +T P ASTA P
Sbjct: 291 KKTTTKPVSQPGETTASTPKAPGPTQPASTTIEATPQPETQPGASTAKAP 340
>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 329 IPLISQPIAYS--AHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVP 502
+P+I P ++ +HF+ S P+ I SSY + +++SG L Y T + + V
Sbjct: 314 LPIIGYPTSHHRVSHFL---SSGIPLPIIGLSSYHRVSHFLSSGCLPIIGYPTSYHRVVF 370
Query: 503 IASTASLPVAAH 538
+S LP+ +
Sbjct: 371 PSSGIPLPIIGY 382
>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1318
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 380 RSPQWPVSYIAPSSY--ITPNTYIASGPLGATTYTTPFVQTVPIASTASLPV 529
R P PVSY P+SY P + +S P+ + + +TP + PI ++S+ V
Sbjct: 40 RRPPVPVSYELPASYQRSVPVSTSSSTPVSSPSNSTP---STPIRKSSSVTV 88
>SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 130 TDSCRSPEKPQLLGTSREASRRLQAQQPRQLIKHTLST 17
TD PE+P G S ++ RR PR+ + T S+
Sbjct: 374 TDQTPRPERPVPAGASPQSRRRRPVPTPRRTVHKTTSS 411
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 384 LHNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPC 500
LH+ P + S +P S P + + P P HPS +PC
Sbjct: 463 LHSHP-SPSQPSPVSHPPAQALLHTSHPSPATHPSPKPC 500
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 395 PVSYIAPSSYITPNTYIASGPLGAT-TYTTPFVQTVPIASTASLPVAAHL 541
P + AP + P T AS A T T V T P A+TASL A L
Sbjct: 154 PETTTAPEATTAPETTTASLVTTAPETTTASLVTTAPEATTASLATTASL 203
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = +2
Query: 275 TTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASG 454
TT G+T T+ I + + + + PV+ IAP S + P T +A
Sbjct: 1896 TTVAGETTAAPDTTMAPEITVAPETTVAPETTVVPETTSAPVTTIAPESTLVPETTVAPD 1955
Query: 455 PLGATTYTTPFVQTVPIAST 514
A T T+P T
Sbjct: 1956 TTVAPETTVVPETTMPPPKT 1975
>SB_1374| Best HMM Match : PAN (HMM E-Value=0.013)
Length = 498
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 150 CIPHPWSTLHRMATLISSRRGLLHMLRISLLHHTLLFLPS*QPPTTVKLLSWL 308
CI W LH LI+S RGL ++ + +H F+P T+ + LS++
Sbjct: 403 CIHMTWVMLH--IGLITSSRGLSYITSTRMCNHMTRFMPHIGLITSSRGLSYI 453
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,327,024
Number of Sequences: 59808
Number of extensions: 368779
Number of successful extensions: 1303
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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