Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0698
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    32   0.36 
At5g47150.1 68418.m05812 YDG/SRA domain-containing protein low s...    30   1.5  
At2g38440.1 68415.m04721 expressed protein                             30   1.5  
At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor...    29   3.4  
At1g60985.1 68414.m06865 expressed protein                             28   4.4  
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    28   5.9  
At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    27   7.8  
At2g40070.1 68415.m04923 expressed protein                             27   7.8  

>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +1

Query: 190 HSFHQEEVCCTCCVYRSCIILCYFSRRSNHLPR*NSSPGFDLLRFFDS 333
           +SFH++EV     ++R C++  YF      LP+  ++PGF + + +D+
Sbjct: 195 YSFHRDEVPAESVMHR-CVV--YFVPAHKQLPKRKNNPGFIVRKVYDT 239


>At5g47150.1 68418.m05812 YDG/SRA domain-containing protein low
           similarity to nuclear protein np95 [Mus musculus]
           GI:4220590; contains Pfam profile PF02182: YDG/SRA
           domain
          Length = 328

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 63  SLLDASRDVPNNCGFSGDLQLSVSWPAASCIPHP 164
           SL+ A RD P  CG   D+  S++ PA     HP
Sbjct: 6   SLVFAIRDFPPGCGTHIDVSSSLNHPAEKAFKHP 39


>At2g38440.1 68415.m04721 expressed protein 
          Length = 1399

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 517 CSRCDRHGLHEGCRVGSGSKRATCDV 440
           CS+CD H  HEG    SG   AT D+
Sbjct: 808 CSKCDDHISHEGFHDLSGLDNATTDI 833


>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
           leaf shape1 (ALE1) identical to subtilisin-like serine
           protease [Arabidopsis thaliana] GI:16444944
          Length = 832

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 296 PLLASTSY--VSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGAT 469
           P+L   S+  +S   + +  IA     IK+ +P W  + IA +   T N Y ++G + + 
Sbjct: 604 PILTGRSFAILSGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSNGEIISA 663

Query: 470 TY 475
            Y
Sbjct: 664 EY 665


>At1g60985.1 68414.m06865 expressed protein
          Length = 95

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 154 SLTLGLLYTVWLHSFHQEEVCCTCCVYRSCIILC 255
           SL L LL   W  S     + C C  Y +  ILC
Sbjct: 54  SLCLMLLAASWDESLRHSSISCNCTTYPNYKILC 87


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
            transcription factor (HUA2) - Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1445

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 432  PTPTSQVALLEPLPTRHPSCRPCRSHRLH--HFPSQLI*SRRGLPPCWR 572
            P P+S      PLP R     P RS   H  HFPSQ +  R+ +   WR
Sbjct: 1317 PAPSSHF----PLPCRIVQSEPQRSSFPHPYHFPSQPVDGRQHMNEEWR 1361


>At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 650

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +3

Query: 390 NGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCR 494
           + P   SL A  SLP P        PLP RH  CR
Sbjct: 34  SSPSGRSLSAEVSLPNPLPADVRGYPLPRRHLICR 68


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 413 PSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAAHL 541
           PSS ++P+T + +G LGA    TP +    + S ++ P A HL
Sbjct: 611 PSSVVSPSTSLPAGQLGAPP-ATPSM----VVSPSTSPPAGHL 648


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 374 KKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAA 535
           K   P  P S    SS   P+   +   + ATT  TP  ++  ++S+   P A+
Sbjct: 201 KSSRPSTPTSRATVSSATRPSLTNSRSTVSATTKPTPMSRSTSLSSSRLTPTAS 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,440,709
Number of Sequences: 28952
Number of extensions: 243699
Number of successful extensions: 797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)