Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0695
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 38 0.011
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 36 0.033
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 34 0.13
05_03_0149 - 8935172-8935254,8935792-8937319 31 0.95
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 29 3.8
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 29 5.1
06_01_0036 + 364316-365758 29 5.1
02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608 29 5.1
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 28 6.7
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 28 8.8
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 37.5 bits (83), Expect = 0.011
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +3
Query: 525 KGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEKDSTGVRKALM 662
KGT G + AN+F E K L+QY V I+PE S GV +A+M
Sbjct: 314 KGTYGDRCIVKANHFFAELPDK-DLHQYDVSITPEVTSRGVNRAVM 358
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 35.9 bits (79), Expect = 0.033
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 525 KGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEKDSTGVRKALM 662
KGT G + AN+F E K L+QY V I+PE S GV +A++
Sbjct: 197 KGTFGDRCIVKANHFFAELPDK-DLHQYDVSITPEVPSRGVNRAVI 241
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 528 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEKDSTGVR 650
G G + L AN+F V+ P ++ Y+VDISP R
Sbjct: 208 GVEGAEIPLSANHFLVQFDPGQKIFHYNVDISPRPSKETAR 248
>05_03_0149 - 8935172-8935254,8935792-8937319
Length = 536
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 545 GSTRSTFLRCYSFWTCAQDGNSFRKDSSTPSSRATANYG 429
G T+ST+ C+ F T A + + R S P S YG
Sbjct: 14 GCTKSTYTECHGFTTPAAEDRALRGTSPRPPSSFLLRYG 52
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 368 ATTHAKIRTGTPFIWRW*CIIRSWPWLSTRGWK 466
+++H+++ T + WRW I R + W RG++
Sbjct: 55 SSSHSRVSDETLWQWRWRQITRPYSWRCRRGFR 87
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 582 TPKWGLYQYHVDISPEKDSTGVRKALMRVHSKTL 683
T +WG YHV +S DS G++K L ++ ++
Sbjct: 659 TDEWGRSFYHVRMSDRVDSCGLKKILEYTYTNSV 692
>06_01_0036 + 364316-365758
Length = 480
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 400 PIHLEVVMH-HP*LAVALDEGVEESFLKLFPSCA 498
P HL VV P + V +D G E L L SCA
Sbjct: 344 PAHLRVVKELRPAVVVCVDHGCERGALNLLQSCA 377
>02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608
Length = 241
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 385 FCMRCCTSISPGCS 344
FC+ CCTSI P C+
Sbjct: 34 FCLACCTSICPHCA 47
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 528 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEKDSTGVRKALM 662
GT G + + AN+F V + +Y Y V +SP + + + +M
Sbjct: 199 GTVGERIVVRANHFLVRVSDNDMIYLYDVSLSPPPKTRRINRVVM 243
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 528 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEKD----STGVRKALMRVH 671
G+ GT + AN+F + K L+QY V I+PE S V + L+R+H
Sbjct: 178 GSIGTRCLVKANHFFAQLPDK-DLHQYDVSITPELTSRIRSRAVMEELVRLH 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,526,607
Number of Sequences: 37544
Number of extensions: 369473
Number of successful extensions: 1012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -