Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0695
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9279| Best HMM Match : Piwi (HMM E-Value=0) 51 1e-06
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 31 0.73
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096) 31 0.73
SB_41289| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_47374| Best HMM Match : RAMP (HMM E-Value=7.4) 29 3.9
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 29 3.9
SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44) 28 6.8
SB_1694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
Length = 941
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +3
Query: 519 SKKGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEKDSTGVRKALMRVHSKTLRRISL 698
+K+G+ GT + +++NYF +ET P+ +YQY+V SPE D R AL+ + L I
Sbjct: 34 NKEGSVGTKVGIVSNYFRLETRPQAAIYQYNVSFSPEVDFKKARFALIGEQRELLGNIRA 93
Query: 699 LMALWLYTVNRL 734
+ L+ +L
Sbjct: 94 FDGMVLFLPKKL 105
>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 269
Score = 31.5 bits (68), Expect = 0.73
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 726 LQCTTTVPSKEISSEVFYCEHAS-VPFGLQCCLFLEKYRRDIDTGP 592
+ C T S S + C+ AS PFGLQCC + K RD P
Sbjct: 116 IHCPNTNSSNVTVSSIQPCKAASDCPFGLQCCRSVCKVGRDCVGSP 161
>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
Length = 191
Score = 31.5 bits (68), Expect = 0.73
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 726 LQCTTTVPSKEISSEVFYCEHAS-VPFGLQCCLFLEKYRRDIDTGP 592
+ C T S S + C+ AS PFGLQCC + K RD P
Sbjct: 38 IHCPNTNSSNVTVSSIQPCKAASDCPFGLQCCRSVCKVGRDCVGSP 83
>SB_41289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 528 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEKDSTGV 647
G G + L AN+F V LY Y ++ISPEK V
Sbjct: 10 GREGRKIKLRANFFQVTLPNVDFLYHYDLEISPEKAPVSV 49
>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 245 LGTTIQCSSSKSWCPDTNSTSGSRLTPCYSHYT 343
L T+ SS KS N +G+RLT CYS T
Sbjct: 84 LTTSHSSSSDKSCYEGMNKATGTRLTDCYSKLT 116
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 263 CSSSKSWCPDTNSTSGSRLTPCYSHYT*TSRRY 361
C + C + + S R TPCY YT ++RY
Sbjct: 831 CYERYTPCIERYTPSTKRYTPCYERYTPCTKRY 863
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 284 CPDTNSTSGSRLTPCYSHYT*TSRRYRCAT 373
C + + S R TPCY YT RY +T
Sbjct: 817 CTERYTPSTKRYTPCYERYTPCIERYTPST 846
>SB_47374| Best HMM Match : RAMP (HMM E-Value=7.4)
Length = 158
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +2
Query: 245 LGTTIQCSSSKSWC---PDTNSTSGSRLTPCYSHYT*TSRRYRCATTHAKIRTG 397
LGTT C + + WC T SGS L C S R +TH K + G
Sbjct: 3 LGTTPACLTERDWCVLGEKTRGFSGSDLANCTSDAVFEPVRELQRSTHWKQQAG 56
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 373 CCTSISPGCSCVVGVTRCEARPACAVGVGTPALTGG 266
CC + +PG + VG+ EA AC V TP+LT G
Sbjct: 431 CCMTANPGTNTQVGLQTPEA--ACCATV-TPSLTAG 463
>SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 768
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +3
Query: 486 SILRTRPEAVTSKKGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEKDSTGV----RK 653
+++RT+ +++ + K GT + L V T K +D + TGV R
Sbjct: 518 ALVRTKGKSIDTLKSIEGTGVYTLNRSALVRTKGK------SIDTLKSIEGTGVYTLNRS 571
Query: 654 ALMRVHSKTLRRISLLMALWLYTVNR 731
AL+R K++ + + +YT+NR
Sbjct: 572 ALVRTKGKSIDTLKSIEGTGVYTLNR 597
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +3
Query: 486 SILRTRPEAVTSKKGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEKDSTGV----RK 653
+++RT+ +++ + K GT + L V T K +D + TGV R
Sbjct: 545 ALVRTKGKSIDTLKSIEGTGVYTLNRSALVRTKGK------SIDTLKSIEGTGVYTLNRS 598
Query: 654 ALMRVHSKTLRRISLLMALWLYTVNR 731
AL+R K++ + + +YT+NR
Sbjct: 599 ALVRTKGKSIDTLKNIEGTGVYTLNR 624
>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
Length = 851
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 596 PVSISRRYFSRKRQHWSPKGTDACS 670
P + R RK +H+SP GT +CS
Sbjct: 688 PALVQERVKMRKARHYSPDGTVSCS 712
>SB_1694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 782
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 515 YSFWTCAQDGNSFRKDSSTPSSRAT 441
+S W C Q G SFR D S+ T
Sbjct: 407 HSCWKCLQPGRSFRTDKELDMSKET 431
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,406,972
Number of Sequences: 59808
Number of extensions: 424681
Number of successful extensions: 1100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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