Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0695
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    45   5e-05
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    31   0.85 
Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z81513-11|CAB04184.2|  254|Caenorhabditis elegans Hypothetical p...    28   6.0  
U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family ...    28   7.9  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    28   7.9  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 519 SKKGTSGTPLDLLANYFTVETTPK-WGLYQYHVDISPEKDSTGVRKALMRVHSKT 680
           SK G+SG P    AN+  +E T   + +YQYHV+  P  DS   R+ ++R ++ T
Sbjct: 41  SKTGSSGQPQKCFANFIPIEMTQSDYSIYQYHVEFEPTVDSKANREKMLRDNNVT 95


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 591 WGLYQYHVDISPEKDSTGVRKALMRVHSKTL 683
           + +YQYHV+  P  DS   R+ ++R  S T+
Sbjct: 6   YSIYQYHVEFEPTVDSKATRENMLRQPSVTV 36


>Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical
           protein F26D2.13 protein.
          Length = 247

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 227 TSTSIWLGTTIQCSSSKSWCPDTNSTSGSRLTPCY---SHYT*TSRRYRCATT 376
           +STS  + +T   SS  S+ PD++S+  S     +   + YT   RR  CATT
Sbjct: 191 SSTSTLISSTAISSSCTSYIPDSSSSCASWAANGFCTNNFYTIAGRRAVCATT 243


>Z81513-11|CAB04184.2|  254|Caenorhabditis elegans Hypothetical
           protein F26D2.14 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 227 TSTSIWLGTTIQCSSSKSWCPDTNSTSGSRLTPCY---SHYT*TSRRYRCATT 376
           TS  I   TT   S+  S+ PD++S+  +     +   +HYT   R+  CATT
Sbjct: 198 TSARISSSTTSITSTCSSYNPDSSSSCAAWAANGFCTNTHYTVARRKATCATT 250


>U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform c protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -3

Query: 710 QCHQKRYPPK--CFTVNTHQCLSDSSAVFFWRNIDVILIQAPFGSCFNSKIVGKQIQGST 537
           QCH +RY PK   F +       D+   F    +D+ L+     SCF + +  K +   T
Sbjct: 61  QCHCRRYGPKGIGFGIGAGSLTMDTGEQFGNTEVDMTLVNV---SCFKTYMCNKLLDSCT 117


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
           protein Y39B6A.18 protein.
          Length = 1352

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +3

Query: 480 TISILRTRPEAVTSKKGTSGTPLDLLA-NYFTVETTPKWGLYQYHVDISPEKDSTGVRKA 656
           T+S L  R  ++ S+K TSG  L+L+     T +   +W    + +  + E D   +RK+
Sbjct: 258 TVSKLSDRLVSIPSRKYTSGFSLELIGLEQLTDDVKNQW---FFEMTNATEVDGQSIRKS 314

Query: 657 LMRVHS--KTLRRIS 695
           L  + S  +TL+ ++
Sbjct: 315 LKPIFSAFETLQAVN 329


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
           protein Y80D3A.8 protein.
          Length = 1293

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +3

Query: 480 TISILRTRPEAVTSKKGTSGTPLDLLA-NYFTVETTPKWGLYQYHVDISPEKDSTGVRKA 656
           T+S L  R  ++ S+K TSG  L+L+     T +   +W    + +  + E D   +RK+
Sbjct: 304 TVSKLSDRLVSIPSRKYTSGFSLELIGLEQLTDDVKNQW---FFEMTNATEVDGQSIRKS 360

Query: 657 LMRVHS--KTLRRIS 695
           L  + S  +TL+ ++
Sbjct: 361 LKPIFSAFETLQAVN 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,828
Number of Sequences: 27780
Number of extensions: 318858
Number of successful extensions: 992
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)