Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0695
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32940.1 68415.m04038 PAZ domain-containing protein / piwi do...    37   0.016
At2g27880.1 68415.m03380 argonaute protein, putative / AGO, puta...    34   0.085
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    33   0.26 
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t...    29   4.2  
At5g15070.1 68418.m01766 expressed protein                             27   9.8  
At3g01310.1 68416.m00042 expressed protein similar to unknown pr...    27   9.8  
At2g18690.1 68415.m02177 expressed protein                             27   9.8  

>At2g32940.1 68415.m04038 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|O04379 Argonaute
           protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 878

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +3

Query: 528 GTSGTPLDLLANYFTVET-TPKWGLYQYHVDISPEK----DSTGVRKALMRVHSKT 680
           GT+G P++L  N+F V    P    YQY V I+ E     D TG+ + LM    KT
Sbjct: 33  GTTGNPIELCTNHFNVSVRQPDVVFYQYTVSITTENGDAVDGTGISRKLMDQLFKT 88


>At2g27880.1 68415.m03380 argonaute protein, putative / AGO,
           putative similar to SP|O04379 Argonaute protein (AGO1)
           {Arabidopsis thaliana}; contains Pfam profiles PF02170:
           PAZ domain, PF02171: Piwi domain
          Length = 997

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +3

Query: 474 PETISILRTRPEAVTSK----KGTSGTPLDLLANYFTVETTPKWGLYQYHVDISPEKDST 641
           PE  S+     +AVT      +GT G  + + AN+F V+   +  LY Y V I+PE  S 
Sbjct: 132 PEMTSLPPASSKAVTFPVRPGRGTLGKKVMVRANHFLVQVADR-DLYHYDVSINPEVISK 190

Query: 642 GVRKALMRVHSKTLR 686
            V + +M++  K  +
Sbjct: 191 TVNRNVMKLLVKNYK 205


>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 528 GTSGTPLDLLANYFTVETTPKWGLYQYHVDISPE 629
           G  G+ + LLAN+F V+      +Y Y+V+ISP+
Sbjct: 158 GQDGSVIYLLANHFLVKFDSSQRIYHYNVEISPQ 191


>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
           SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2, SMUBP-2)
           [Mesocricetus auratus]
          Length = 961

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
 Frame = -1

Query: 415 PPDEWGPSSNFCMRCCTSISPGC-SCVVGVTRCEARPACAVGVGTPALTG 269
           PP    P    C+R C S   G  +C  G         C++GV   +  G
Sbjct: 352 PPTTLSPGDMVCIRVCDSRGAGATACTQGFVHNLGEDGCSIGVALESRHG 401


>At5g15070.1 68418.m01766 expressed protein
          Length = 1049

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 432 RMMHHHLQMNGVPVLIFACV 373
           R ++ HL+M G+PV  +ACV
Sbjct: 104 RKVYEHLEMYGIPVPRYACV 123


>At3g01310.1 68416.m00042 expressed protein similar to unknown
           protein GB:BAA24863 [Homo sapiens], unknown protein
           GB:BAA20831 [Homo sapiens], unknown protein GB:AAB42264
           [Caenorhabditis elegans]
          Length = 1056

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 432 RMMHHHLQMNGVPVLIFACV 373
           R ++ HL+M G+PV  +ACV
Sbjct: 111 RKVYEHLEMYGIPVPRYACV 130


>At2g18690.1 68415.m02177 expressed protein
          Length = 322

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 428 IRSWPWLSTRGWKSPS*NYFHLA 496
           I+ +P LS + WK P   YF++A
Sbjct: 128 IKDFPVLSLKSWKGPLVTYFYIA 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,655,850
Number of Sequences: 28952
Number of extensions: 286783
Number of successful extensions: 737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)