Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0694
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               29   3.8  
SB_14206| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-12)                 27   8.8  
SB_49733| Best HMM Match : GLTT (HMM E-Value=0.8)                      27   8.8  
SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +1

Query: 73  KKTCPENNNKARIGHM-VHNQFGLLTKKKYHFKRSHISRRCLSVTTGFPDSDLILRLNFD 249
           KK    N N+  +G   +HN+  ++ K +Y+F++        SVTTG      +LR+  +
Sbjct: 168 KKENERNQNQMDMGDSNIHNK--IVEKNRYNFEKK-------SVTTGNKVESSLLRVGNN 218

Query: 250 LLSQGQQKTDSGDKK*PLISL 312
              Q  Q   S D    LIS+
Sbjct: 219 SQKQRHQTVSSDDTPGDLISI 239


>SB_14206| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-12)
          Length = 336

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = -3

Query: 334 LAPVLLIVEILKVIFCHRSRFFAVLETKDRSSIV-KSNQNREIPW*PTNISVKCANA*SD 158
           + P + I  I  V+    +  F+VL   + + ++   +++R +   P+NI + C+ A SD
Sbjct: 22  VTPPVYITNIASVVL---NLIFSVLAVTENAVVIFVISKSRHLRSSPSNILL-CSLAISD 77

Query: 157 IFFLSTNQTDYEPYDRFELY 98
           +   S  QT Y  Y   ELY
Sbjct: 78  LVIGSVCQTFYVVYKVSELY 97


>SB_49733| Best HMM Match : GLTT (HMM E-Value=0.8)
          Length = 149

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 352 YFCYQWLAPVLLIVEILKVI 293
           +FC+QWL+PV+L   +L  +
Sbjct: 6   WFCHQWLSPVVLSPVVLSPV 25


>SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 302 KGYFLSPESVFCCP*DKRSKFNRKIK 225
           +G F+SP +VF     KR K NRK K
Sbjct: 47  EGMFVSPRAVFSSSGTKREKTNRKKK 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,029,922
Number of Sequences: 59808
Number of extensions: 321456
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)