Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0694
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16980.1 68414.m02062 alpha, alpha-trehalose-phosphate syntha...    29   3.1  
At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate syntha...    28   4.1  
At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate syntha...    27   7.2  
At1g02670.1 68414.m00217 DNA repair protein, putative similar to...    27   7.2  

>At1g16980.1 68414.m02062 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 821

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 52  NYKLMFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHISRRCLS 198
           +Y LMF  +   E NNK ++G  +H+ F      K    RS + R  L+
Sbjct: 156 DYHLMFLPQYLKEYNNKIKVGWFLHSPFPSSEVYKTLPSRSELLRAILA 204


>At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325, GI:4468259 from (Pichia
           angusta); contains Pfam profiles PF00982:
           Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 730

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 52  NYKLMFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHISRRCLS 198
           +Y LMF  +   E NNK ++G  +H+ F      K    RS + R  L+
Sbjct: 134 DYHLMFLPQYLKEYNNKIKVGWFLHSPFPSSEIYKTLPSRSELLRSVLA 182


>At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 942

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 52  NYKLMFKKKTCPENNNKARIGHMVHNQF 135
           +Y LMF  K   E N+K ++G  +H  F
Sbjct: 237 DYHLMFLPKCLKEYNSKMKVGWFLHTPF 264


>At1g02670.1 68414.m00217 DNA repair protein, putative similar to
           SP|P79051 DNA repair protein rhp16 (RAD16 homolog)
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 678

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 337 TDNRNSISTMSELLAYSIISNTQSHYSSNLFLHNHI 444
           T  +N +  +  L++YS ++   S Y+S  F H HI
Sbjct: 305 TPLQNDVDELYSLVSYSFLNFFYSTYASFAFRHTHI 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,929,111
Number of Sequences: 28952
Number of extensions: 230767
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)