Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0693
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46121| Best HMM Match : Cornifin (HMM E-Value=0.47)                 29   5.7  
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)                   28   7.5  
SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)                 28   7.5  

>SB_46121| Best HMM Match : Cornifin (HMM E-Value=0.47)
          Length = 239

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 412 LHTLRTMYLTH--TRMHTIYCQTFVLDVCGQIEIKYCLSLL 528
           L T+  + LT+  T + T YC T + D C  I   YC ++L
Sbjct: 5   LATVPPIILTNNCTTILTDYCSTILTDYCSTILTDYCTTIL 45



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 445 TRMHTIYCQTFVLDVCGQIEIKYCLSLL 528
           T + T YC T + D C  I   YC+++L
Sbjct: 42  TTILTDYCTTILTDYCSTILTDYCITIL 69


>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
          Length = 634

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 424 VVCVMFSLLIII**NIYFRKNP*NNNNTIVSTQTV 320
           ++ V+  ++III  NI   KN  NNN TIV+  +V
Sbjct: 135 IIIVVVVVIIII--NIIINKNKNNNNTTIVNIMSV 167


>SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)
          Length = 755

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 626 TIINWNCKFVHYYDRILYFYYHKCRQNYTIKNINK 522
           T++N  C    Y+DR L  +Y   R     +N+NK
Sbjct: 496 TLVNLGCYRDDYFDRALPTFYANMRDQIVWENMNK 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,940,509
Number of Sequences: 59808
Number of extensions: 382158
Number of successful extensions: 945
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)