Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0693
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56080.1 68418.m06997 nicotianamine synthase, putative simila...    30   1.5  
At5g04950.1 68418.m00524 nicotianamine synthase, putative simila...    30   1.5  
At4g37250.1 68417.m05273 leucine-rich repeat family protein / pr...    28   6.1  
At3g19500.1 68416.m02471 ethylene-responsive protein -related co...    28   6.1  

>At5g56080.1 68418.m06997 nicotianamine synthase, putative similar
           to nicotianamine synthase [Lycopersicon
           esculentum][GI:4753801], nicotianamine synthase 2
           [Hordeum vulgare][GI:4894912]
          Length = 320

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 390 IIINKENITHTTYHVFDAHTHAYYLLSNFCS 482
           I++ K ++ +TT+H FD  +HA  L SN  S
Sbjct: 140 IVLAKFHLPNTTFHNFDIDSHANTLASNLVS 170


>At5g04950.1 68418.m00524 nicotianamine synthase, putative similar
           to nicotianamine synthase [Lycopersicon
           esculentum][GI:4753801], nicotianamine synthase 2
           [Hordeum vulgare][GI:4894912]
          Length = 320

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 390 IIINKENITHTTYHVFDAHTHAYYLLSNFCS 482
           I++ K ++ +TT+H FD  +HA  L SN  S
Sbjct: 141 IVLAKFHLPNTTFHNFDIDSHANTLASNLVS 171


>At4g37250.1 68417.m05273 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 768

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 581 ILYFYYHKCRQNYTIKNINKDKQ 513
           +++ Y ++C++N  + N N DKQ
Sbjct: 346 VIFLYIYRCKKNKIVDNNNNDKQ 368


>At3g19500.1 68416.m02471 ethylene-responsive protein -related
           contains similarity to ethylene-inducible ER33 protein
           [Lycopersicon esculentum] gi|5669656|gb|AAD46413
          Length = 270

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 665 CLLTERKANDLLNTGGRTSWEPARVGTTTSP 757
           CL+       + N+ G   W PA +G TTSP
Sbjct: 234 CLVPVSSTVHVENSNGADFWSPATMGHTTSP 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,520
Number of Sequences: 28952
Number of extensions: 253763
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)