Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0691
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    30   0.29 
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    29   0.67 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    29   0.89 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.7  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    27   3.6  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 219  DDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYE-MFDKVDKFLQSHTLRVKVPEEITK 395
            ++ I I++D+S+ +T  V+D+  A+  + +D   E   D ++K        VK  E +T 
Sbjct: 884  EENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEKDELEDIKEVKEDENLTT 943

Query: 396  SAASEYVP 419
               +  +P
Sbjct: 944  LEETIEIP 951


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +3

Query: 231 KITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSAASE 410
           K+ E +   K   VE +      L++ P   M +KV K       + KV E     A +E
Sbjct: 94  KVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEKVSK-------KPKVSE-----AHNE 141

Query: 411 YVPRSLLTDLPSELDMPLDGEDE 479
            +    +  + +ELD+P+ G+DE
Sbjct: 142 EISPENVETIENELDLPVKGKDE 164


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 309  DPAYEMFDKVDKFLQSHTL----RVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGED 476
            D +Y  FD +    ++H +     V V   IT +   EY+ +   T L  ++ +  DG+D
Sbjct: 1018 DCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKD 1077

Query: 477  EAEVVE 494
              E+ E
Sbjct: 1078 REEIGE 1083


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 189  TLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLR 368
            TL   SS AND+  ++T  +++  T T + D+SA   +       + D  D  L+ +  R
Sbjct: 1232 TLDGNSSSANDNTQELTNVVNVALTSTGDLDDSA---IVSKLNQILSDFRDDLLEHNVRR 1288

Query: 369  VK-VPEEITKSAASEY 413
            V  V   I KSA   Y
Sbjct: 1289 VTIVGGRINKSAYPSY 1304


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
 Frame = +3

Query: 6   AVSRLCRQTKQEQ*ATVKMARIIVL--LSIVAFASATYPASKLVKNIYNECLSQYSVECV 179
           A+S+   +TK      + + R  VL  +S V   +A    +K  K  ++E     + E  
Sbjct: 30  ALSKGTEKTKLSTNFEINLPRRTVLSDVSNVGKNNADEKDTKKAKRSFDESNLSTNEEAD 89

Query: 180 KPRTLQWMSS--VANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDK 344
           KP   +++    V + +     E L   +   V+D  S++P +A++ A E+F+ + K
Sbjct: 90  KPVESKFVKKLKVYSKNADPSVETLQKDRVSNVDDHLSSNPLMAEEYAPEIFEYIRK 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,793
Number of Sequences: 5004
Number of extensions: 55022
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)