Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0688
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12770.1 68416.m01594 pentatricopeptide (PPR) repeat-containi...    32   0.41 
At4g01750.1 68417.m00227 expressed protein T15B16.8                    29   2.2  
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ...    29   2.2  
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ...    29   2.2  
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00...    29   2.2  
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    29   2.9  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    29   3.9  
At4g01770.1 68417.m00231 hypothetical protein similar to T15B16.9      29   3.9  
At1g60460.1 68414.m06807 hypothetical protein                          29   3.9  
At5g02210.1 68418.m00142 expressed protein ; expression supporte...    28   5.1  
At1g42700.1 68414.m04928 hypothetical protein                          28   5.1  
At5g58920.1 68418.m07381 expressed protein                             27   8.9  
At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ...    27   8.9  
At3g62060.1 68416.m06973 pectinacetylesterase family protein sim...    27   8.9  
At3g57050.3 68416.m06352 cystathionine beta-lyase, chloroplast /...    27   8.9  
At3g57050.2 68416.m06351 cystathionine beta-lyase, chloroplast /...    27   8.9  
At3g57050.1 68416.m06350 cystathionine beta-lyase, chloroplast /...    27   8.9  
At2g42490.1 68415.m05256 copper amine oxidase, putative similar ...    27   8.9  
At1g07530.1 68414.m00806 scarecrow-like transcription factor 14 ...    27   8.9  

>At3g12770.1 68416.m01594 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 719

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
 Frame = -1

Query: 487 IESAHLVFTSLMVVDVFVHGYMD-GIGL----RDG-HLYFFFDLNGIRLFD--FIG---- 344
           +E A LVF   +  DV V   M  G GL    R+   LY   +  G+   D  F+G    
Sbjct: 374 VEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMA 433

Query: 343 --HWFFDRVRYWFFNNLVDNLINRYMDRLLHCDVDRVGLRYGHL 218
             H    R  +WFFN + D+ IN        C +D +G R GHL
Sbjct: 434 CNHSGMVREGWWFFNRMADHKINPQQQHYA-CVIDLLG-RAGHL 475


>At4g01750.1 68417.m00227 expressed protein T15B16.8
          Length = 367

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 205 PAVREGAHTSTLPGPRHSGATYPCTCL 285
           P ++   H+  LP P  +G TY C+C+
Sbjct: 222 PQIKPLNHSHDLPAPDQNGETYICSCM 248


>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 299

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 176 PIPHPVAVSVPQYVKVPIPQPYPVHVTVEQP 268
           P P P  V+  + V  PIP+P P  ++   P
Sbjct: 130 PTPTPAPVAATETVTTPIPEPVPATISSSTP 160


>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 419

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 176 PIPHPVAVSVPQYVKVPIPQPYPVHVTVEQP 268
           P P P  V+  + V  PIP+P P  ++   P
Sbjct: 130 PTPTPAPVAATETVTTPIPEPVPATISSSTP 160


>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 435

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +2

Query: 146 HVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 238
           H+ +   + +P+P P+A+++P  + +P+P P
Sbjct: 372 HMHMPMPMAMPMPMPIAMAMPMPMPMPMPMP 402


>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 156 TVTWYGFVCSVCVWPSGSHSSEDRALASATKRRTTVVLKAIMLP 25
           T T  G  CS+C  P+  HS  ++ + +  +   T+VL  +  P
Sbjct: 711 TKTGAGMPCSLCPHPTCQHSVRNQGVCACPECEGTLVLDPVSFP 754


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 128 EHTKPYHVTVVKKIGVPIPHPVAVSVPQYV--KVPIPQPYPVH 250
           EH   Y   +VKK   P P PV +  P  V  K P P P PV+
Sbjct: 362 EHPPIYIPPIVKK---PCPPPVPIYKPPVVIPKKPCPPPVPVY 401



 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 176 PIPHPVAVSVPQYVKVPIPQPYPVHVTVEQPI 271
           P P P  + +P ++K P P  Y   V V  P+
Sbjct: 165 PFPLPPPLELPPFLKKPCPPKYSPPVEVPPPV 196


>At4g01770.1 68417.m00231 hypothetical protein similar to T15B16.9
          Length = 361

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 205 PAVREGAHTSTLPGPRHSGATYPCTCL 285
           P ++   H+  LP P  +G TY C+C+
Sbjct: 216 PQIKPLNHSHDLPHPDRNGETYICSCM 242


>At1g60460.1 68414.m06807 hypothetical protein
          Length = 356

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 255 QWSNLSMYLFIRLSTKLLKNQYRTRSKN 338
           +W N   Y+ I+++     NQY TR KN
Sbjct: 197 EWDNFPSYVQIQIALHWYHNQYPTRQKN 224


>At5g02210.1 68418.m00142 expressed protein ; expression supported
           by MPSS
          Length = 161

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 291 LSTKLLKNQYRTRSKNQCPMKSK 359
           +S+++LK +YR++  NQ PM+ K
Sbjct: 4   ISSRILKPEYRSQYNNQIPMQEK 26


>At1g42700.1 68414.m04928 hypothetical protein
          Length = 149

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 288 RLSTKLLKNQYRTRSKNQCPMKSKSLIPLRSKKK*---RCPSLSPIPSMYPCTNTSTTI 455
           +L+ K+++N   T   N  P  +     +  +++    RC  L P PS +    T+TT+
Sbjct: 22  KLAKKIIQNAGDTNGNNSTPNSNDDFAQVFGRERPGRVRCVGLGPTPSSFIQNRTTTTL 80


>At5g58920.1 68418.m07381 expressed protein
          Length = 162

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 568 GVSSKKSNKFEIRNYLRNTGIQNRDFFVLVLVARTAICKYKI 693
           G+ + KS   +  NYL+  G+   D F    V +  +C Y I
Sbjct: 12  GIEALKS--MDANNYLKKVGLGRDDMFFWKQVGKALLCTYTI 51


>At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 600

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 163 LHHGHMVRLRVFCVRVAFGLPFFRRPS 83
           +H  H+ RLR  C  V  G  +F+R S
Sbjct: 486 IHEKHLSRLRALCKTVELGKRYFKRCS 512


>At3g62060.1 68416.m06973 pectinacetylesterase family protein
           similar to pectinacetylesterase precursor GI:1431629
           from [Vigna radiata]; contains Pfam profile: PF03283
           pectinacetylesterase
          Length = 419

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 376 LNGIRLFDFIGHWFFDRVR 320
           LNG R+ + +G W+FDR +
Sbjct: 380 LNGKRVAESVGDWYFDRAK 398


>At3g57050.3 68416.m06352 cystathionine beta-lyase, chloroplast /
           beta-cystathionase / cysteine lyase (CBL) identical to
           SP|P53780 Cystathionine beta-lyase, chloroplast
           precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
           (Cysteine lyase) {Arabidopsis thaliana}
          Length = 378

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 248 GPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVLCACGLRAPILQK 90
           GP    VW  S    PT P    S++R  S  +H   + VL    + +P+L +
Sbjct: 215 GPQTKLVWLES----PTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSR 263


>At3g57050.2 68416.m06351 cystathionine beta-lyase, chloroplast /
           beta-cystathionase / cysteine lyase (CBL) identical to
           SP|P53780 Cystathionine beta-lyase, chloroplast
           precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
           (Cysteine lyase) {Arabidopsis thaliana}
          Length = 449

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 248 GPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVLCACGLRAPILQK 90
           GP    VW  S    PT P    S++R  S  +H   + VL    + +P+L +
Sbjct: 200 GPQTKLVWLES----PTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSR 248


>At3g57050.1 68416.m06350 cystathionine beta-lyase, chloroplast /
           beta-cystathionase / cysteine lyase (CBL) identical to
           SP|P53780 Cystathionine beta-lyase, chloroplast
           precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
           (Cysteine lyase) {Arabidopsis thaliana}
          Length = 464

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 248 GPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVLCACGLRAPILQK 90
           GP    VW  S    PT P    S++R  S  +H   + VL    + +P+L +
Sbjct: 215 GPQTKLVWLES----PTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSR 263


>At2g42490.1 68415.m05256 copper amine oxidase, putative similar to
           copper methylamine oxidase precursor (MAOXII)
           [Arthrobacter sp.] SWISS-PROT:Q07123
          Length = 776

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -1

Query: 685 IYKWQSWPLTL--IRKSRDF--EFRCYVSNFEFQIYYFF 581
           ++K Q W   L  +R+SR     F C V+N+E+  Y+ F
Sbjct: 466 LWKHQDWRTGLAEVRRSRRLTVSFLCTVANYEYGFYWHF 504


>At1g07530.1 68414.m00806 scarecrow-like transcription factor 14
           (SCL14) identical to GB:AAD24412 from [Arabidopsis
           thaliana] (Plant J. 18 (1), 111-119 (1999))
          Length = 769

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 73  ARQRSVF*RMGARRPHAHRTHEAVPCDRGEEDRSSDSPSGGCVGPAVREGAHTST 237
           A ++S++  +G + P +     A   D  E   +SDSP G C G A  + A T+T
Sbjct: 114 AAEKSLYEALGEKYPSSS---SASSVDHPER-LASDSPDGSCSGGAFSDYASTTT 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,200,175
Number of Sequences: 28952
Number of extensions: 316656
Number of successful extensions: 955
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)