Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0687
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   0.82 
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   1.9  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   3.3  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    24   4.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    24   4.4  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    24   5.8  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   5.8  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    23   7.7  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    23   7.7  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 0.82
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 184  DRETDSEQVP*GKVEKNFEERVQEYVKPWGGPV 282
            DR+  S +V  G++EK + + V  Y++   GPV
Sbjct: 1105 DRDERSARVVKGRIEKTYLKDVTSYIEEVYGPV 1137


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 19/72 (26%), Positives = 26/72 (36%)
 Frame = -3

Query: 218 PHGTCSLSVSRSYLALDGVYHPLRAALSSNPTLRSVPLAATLRRYGPGTLYGKTAPFKTN 39
           P G+   S S S         P +A + SNP   +V + +      P T     AP  T 
Sbjct: 140 PSGSVPPSASVSRANSTATTTPHKAGVVSNPAAANVHVLSVAASPNPSTPSNGPAPVSTT 199

Query: 38  LDRSRRDEPRAE 3
              SR    R +
Sbjct: 200 ATPSRNPVTRLQ 211


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -2

Query: 129 PDSKERPS-RRDPPSLRAWHPLRENGPVQDELGQE 28
           P S +  S  R+P S RA  P R+N P       E
Sbjct: 159 PQSSQSSSVSRNPASSRAGSPTRDNAPAASPASSE 193


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 282 YRAPPRFHVLLNSLFKVLFNFPSRYLFAIGLAVIFSL 172
           Y APP F  LL +  K    F    L ++ +   FSL
Sbjct: 225 YFAPPIFFYLLGTCVKPKIRFSRFILLSVTVVFTFSL 261


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 217 GKVEKNFEERVQEYVKPWGGPVPNSPYSES 306
           G VEK   E+     KPW G   + P + S
Sbjct: 89  GSVEKKSSEKSSTNNKPWRGDNTSKPSANS 118


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 246 SLFKVLFNFPSRYLFAIGLAVIF 178
           S+  VL + P++YL  + +AVIF
Sbjct: 151 SIIFVLHSHPAQYLGTLSIAVIF 173


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 122 LRSVPLAATLRRYGPGTLYGK 60
           L  VP      RYG G LYGK
Sbjct: 705 LEHVPKFEPFIRYGAGQLYGK 725


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 237 KVLFNFPSRYLFAIGLAV 184
           +++  FP +Y FA+GL +
Sbjct: 545 ELILGFPPKYFFALGLVL 562


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 177 SLRWSLPPA*GCTLKQPDSKERPSRRDP 94
           S+  +LPPA G     PD   R   RDP
Sbjct: 367 SIPSTLPPADGVPKPTPDGFPRRFERDP 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,170,538
Number of Sequences: 5004
Number of extensions: 20255
Number of successful extensions: 65
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)