Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0687
(307 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998 28 1.7
07_03_0072 - 13051145-13052362 28 1.7
04_04_1404 + 33302080-33303341,33303435-33305307 27 2.2
11_06_0164 + 20833525-20834685,20835053-20835124,20836302-208363... 27 2.9
10_05_0055 - 8625420-8625737,8625835-8625988,8626202-8626439,862... 27 3.8
04_04_0719 + 27541129-27541520,27541607-27541965,27542061-275421... 27 3.8
04_01_0029 + 372486-373426,373533-373938,374380-374832 27 3.8
01_06_1099 + 34525714-34526775 26 5.1
09_04_0133 - 14938397-14938813,14939343-14939465,14939560-14939859 26 6.7
05_02_0085 - 6465126-6466049 26 6.7
04_03_0872 + 20452534-20453271 26 6.7
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 26 6.7
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 25 8.9
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868... 25 8.9
05_03_0089 - 8327044-8327142,8327238-8327306,8327413-8327504,832... 25 8.9
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175... 25 8.9
03_02_0739 + 10834581-10835927 25 8.9
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 25 8.9
01_06_0058 - 26056334-26056630,26057063-26057365,26057748-260578... 25 8.9
>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
Length = 473
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -1
Query: 112 SLSPRPSVATGLAPSTGKRPRSRRTWTGVVA 20
+L RPSV G A +T + P SRR GV A
Sbjct: 97 TLYTRPSVLAGAASATTRSPSSRRGGGGVRA 127
>07_03_0072 - 13051145-13052362
Length = 405
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 198 IGLAVIFSLRWSLPPA*GCTLKQPDSKE 115
+GL+ + ++RWSLPP+ L+Q + E
Sbjct: 142 VGLSPVTAVRWSLPPSLLAALQQSEPLE 169
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 123 SKERPSRRDPPSLRAWHPLRENGPVQDELGQESSRRASCR 4
S RP R D PS + HP +D E RR S R
Sbjct: 414 SFNRPPRSDVPSHSSRHPKSGQSEAEDPTAAEERRRESDR 453
>11_06_0164 +
20833525-20834685,20835053-20835124,20836302-20836328,
20836419-20836496,20837005-20837046
Length = 459
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 30 PVQVRLERGRFPVEGARPVATEGRGERDA 116
P +V + + R P EGA VA G G+ A
Sbjct: 19 PARVAMHKRRLPAEGALSVARVGAGDEAA 47
>10_05_0055 -
8625420-8625737,8625835-8625988,8626202-8626439,
8626610-8626820,8626909-8627033,8627451-8627570,
8627749-8628625
Length = 680
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 118 GASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATSLV 8
G+S SP PS + L P GKR R+R +V S++
Sbjct: 275 GSSSSPLPSPSPSLPPLEGKR-RNRPKNAAIVVVSVL 310
>04_04_0719 +
27541129-27541520,27541607-27541965,27542061-27542189,
27542278-27542409,27542522-27542794,27542899-27543299,
27543424-27543567
Length = 609
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 200 LSVSRSYLALDGVYHPLRAALSSNPTLRSVPL 105
L + S LAL G HP+ AAL+ +P +S P+
Sbjct: 334 LDIPGSLLALTGT-HPMIAALAVDPRRQSTPV 364
>04_01_0029 + 372486-373426,373533-373938,374380-374832
Length = 599
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 215 HGTCSLSVSRSYLALDGVYHPL--RAALSSNPTLRSV 111
H +CS V +A+DG+ H L R+ + + P +R++
Sbjct: 472 HPSCSFPVCIKMVAIDGLDHALLDRSGVHAGPVIRTL 508
>01_06_1099 + 34525714-34526775
Length = 353
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 185 SYLALDGVYHPLRAALSSNPTLRSVPLAATLRRYGPGTLY 66
S +A ++ LR+ + +PTLRS+ LA G GTLY
Sbjct: 214 SLIAASTRHYLLRSIIKDHPTLRSLVLADA---DGQGTLY 250
>09_04_0133 - 14938397-14938813,14939343-14939465,14939560-14939859
Length = 279
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -1
Query: 148 GLHSQATRL*GASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATS 14
G H+ L SLSP P AT APS +R VA +
Sbjct: 17 GHHAHQRALLAPSLSPPPPSATARAPSVSTSCAAREDAAPAVAAA 61
>05_02_0085 - 6465126-6466049
Length = 307
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 155 PLRAALSSNPTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRR 21
P + S +P+ S LRR PG + A F T+L RR
Sbjct: 22 PTKPTPSPSPSPASARRRRVLRRGSPGRIKSLAATFDTSLRGCRR 66
>04_03_0872 + 20452534-20453271
Length = 245
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -3
Query: 137 SSNPTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDE 15
S R++P+ + GP Y ++AP K + RR E
Sbjct: 134 SPTSAARAIPMTPRPKSAGPAAPYHQSAPVKVPVRPPRRQE 174
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 103 PRPSVATGLAPSTGKRPRSR 44
PRP VA L P + K PR+R
Sbjct: 80 PRPPVAVPLKPESPKPPRAR 99
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 48 ERGRFPVEGARPVATEGRGERDA 116
+RGR P PV +EGR + DA
Sbjct: 60 KRGRSPPPPPSPVISEGRDDEDA 82
>05_03_0355 -
12885898-12886290,12886351-12886644,12886744-12886871,
12886952-12888482
Length = 781
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 220 KVEKNFEERVQEYVKPWGGPVPNSPYSE 303
++ + +R + VKPW GP+P + S+
Sbjct: 159 RIVDSVAKRRKSSVKPWKGPLPRARISQ 186
>05_03_0089 -
8327044-8327142,8327238-8327306,8327413-8327504,
8327932-8329042
Length = 456
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 73 PSTGKRPRSRRTWTGVVATSLV 8
PST +RP R W GVV V
Sbjct: 263 PSTPERPSKRPMWRGVVVAYAV 284
>04_04_0842 +
28616729-28617078,28617166-28617359,28617416-28617582,
28617693-28617928,28618049-28618160
Length = 352
Score = 25.4 bits (53), Expect = 8.9
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = -3
Query: 194 VSRSYLALDGVYHPLRAALSSNPTLRSVPLAATLRRYGPGTLYG 63
V RS+L + PLR NP L P AATLR+YG YG
Sbjct: 92 VGRSFLRRLS-FQPLR----ENPVLG--PSAATLRKYGALDWYG 128
>03_02_0739 + 10834581-10835927
Length = 448
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 87 LRAWHPLRENGPVQDELGQESSRRASCR 4
L AW P+ GPV+D G+ + S R
Sbjct: 276 LDAWAPMGPRGPVRDRYGELFAEELSGR 303
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 122 LRSVPLAATLRRYGPGTLYGKTAP 51
L S AA LRRYGP L AP
Sbjct: 49 LSSEEAAARLRRYGPNELERHAAP 72
>01_06_0058 -
26056334-26056630,26057063-26057365,26057748-26057891,
26057947-26058702,26058844-26059088,26059177-26060079,
26060163-26060225,26060537-26061025,26061211-26061291,
26061801-26061956,26062371-26062416
Length = 1160
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 212 REGKLKRTLKREFKST*NRGGARYPI 289
R+GK + REF +T ++G YP+
Sbjct: 781 RDGKCRNNYLREFNTTTSQGKDSYPL 806
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,637,767
Number of Sequences: 37544
Number of extensions: 162381
Number of successful extensions: 590
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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