Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0687
         (307 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   1.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   1.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   3.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   3.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   3.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   3.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 291 RIGYRAPPRFHVLLNSLFKVLFNFPSRYL 205
           R G +A P    +   L  VL NFP+RY+
Sbjct: 434 RFGRKADPNGDYIRRYL-PVLKNFPTRYI 461


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 273 PPRFHVLLNSLFKVLFNFPSRYLFAIGL 190
           PP   ++L ++  ++F   SRY+F   L
Sbjct: 331 PPLAAIVLGAIGSIVFYIISRYVFRSAL 358


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -2

Query: 297 IGRIGYRAPPRFHVLLNSLFKVLFNFP 217
           +G+  ++AP +    +  L    F FP
Sbjct: 58  VGKFRFKAPQKIPAWIGELSATKFGFP 84


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = -1

Query: 97  PSVATGLAPSTGKRPRSRRTWTGVVATSLVPN 2
           P     + P   ++P     W GV+  +++PN
Sbjct: 66  PFAKPPIGPLRFRKPLPIEPWHGVLNATVLPN 97


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = -1

Query: 97  PSVATGLAPSTGKRPRSRRTWTGVVATSLVPN 2
           P     + P   ++P     W GV+  +++PN
Sbjct: 66  PFAKPPIGPLRFRKPLPIEPWHGVLNATVLPN 97


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -2

Query: 297 IGRIGYRAPPRFHVLLNSLFKVLFNFP 217
           +G+  ++AP +    +  L    F FP
Sbjct: 58  VGKFRFKAPQKIPAWIGELSATKFGFP 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,845
Number of Sequences: 438
Number of extensions: 1467
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)