Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0687
(307 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g42080.1 68414.m04853 hypothetical protein contains similarit... 31 0.15
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 28 1.4
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 28 1.4
At3g59620.1 68416.m06652 hypothetical protein 27 3.3
At2g21190.1 68415.m02514 ER lumen protein retaining receptor fam... 26 4.3
At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 fami... 26 4.3
At2g04235.1 68415.m00411 expressed protein weak similarity to ne... 26 5.7
At1g26330.1 68414.m03211 hypothetical protein 26 5.7
At5g05240.1 68418.m00560 expressed protein similar to unknown pr... 25 7.6
At4g21850.2 68417.m03160 methionine sulfoxide reductase domain-c... 25 7.6
At4g21850.1 68417.m03159 methionine sulfoxide reductase domain-c... 25 7.6
At3g09140.1 68416.m01075 expressed protein contains Pfam profile... 25 7.6
At2g24700.1 68415.m02951 transcriptional factor B3 family protei... 25 7.6
>At1g42080.1 68414.m04853 hypothetical protein contains similarity
to cytochrome P450 (rapN) GI:987088 from [Streptomyces
hygroscopicus]
Length = 151
Score = 31.1 bits (67), Expect = 0.15
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -2
Query: 234 VLFNFPSRY---LFAIGLAVIFSLRWSLPPA*GCTLKQPDSKERPSRRDPPSLR 82
+LF P R L IG ++ FSL+ PP L P+ PS DPP LR
Sbjct: 81 ILFTHPKRREKKLSLIGGSLAFSLKIEYPPLDPVRLLTPEDLSHPS--DPPDLR 132
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 223 VEKNFEERVQEYVKPWGGPVPNS 291
++ NF ++ +EY K WGG + S
Sbjct: 212 IKANFNDKYEEYRKKWGGGIMGS 234
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 223 VEKNFEERVQEYVKPWGGPVPNS 291
++ NF ++ +EY K WGG + S
Sbjct: 213 IKANFNDKYEEYRKKWGGGIMGS 235
>At3g59620.1 68416.m06652 hypothetical protein
Length = 120
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 24 TTPVQVRLERGRFPVEGAR 80
T P Q E GR PVEGAR
Sbjct: 62 TEPFQFDREHGRVPVEGAR 80
>At2g21190.1 68415.m02514 ER lumen protein retaining receptor family
protein similar to SP|P33948 ER lumen protein retaining
receptor. {Plasmodium falciparum}; contains Pfam profile
PF00810: ER lumen protein retaining receptor
Length = 269
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 270 PRFHVLLNSLFKVLFNFPSRYLFAIGLAVIFS-LRWSL 160
P+ V+ N+ K++ F + Y+FA+G+A FS W L
Sbjct: 176 PQLRVMQNT--KIVEPFTAHYVFALGVARFFSCAHWVL 211
>At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 family
protein very low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 457
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 87 LRAWHPLRENGPVQDELGQ 31
L AW P+ GP++DE G+
Sbjct: 285 LDAWAPMGPKGPIRDEAGK 303
>At2g04235.1 68415.m00411 expressed protein weak similarity to
neurofilament protein (GI:161292) [Loligo pealei]; weak
similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
(Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
cerevisiae]
Length = 1226
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 191 RPIANKYREGKLKRTLKREFKST*NRGGARYP 286
R ++ R+G + + LK+E +ST + G YP
Sbjct: 1177 RKVSGTKRDGVVSKQLKKEIESTIDDVGVGYP 1208
>At1g26330.1 68414.m03211 hypothetical protein
Length = 1196
Score = 25.8 bits (54), Expect = 5.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 96 PPSLRAWHPLRENGPVQDEL 37
P SL AWHP+ + ++D +
Sbjct: 1034 PTSLFAWHPVHSHSTIEDNV 1053
>At5g05240.1 68418.m00560 expressed protein similar to unknown
protein (gb AAD32815.2)
Length = 530
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 108 SRRDPPSLRAWHPLRENGPVQDELGQESSRRASCRI 1
++RDP ++ W +++NG + + G S+ +SC I
Sbjct: 154 AKRDP--MKVWTEMKQNGYLSNPNGGISTTSSSCLI 187
>At4g21850.2 68417.m03160 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 121
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 97 PSVATGLAPSTGKRPRSRRTWTGVVA 20
P+ AT +APSTG + + W +++
Sbjct: 2 PTSATAVAPSTGSVQKKDQDWRAILS 27
>At4g21850.1 68417.m03159 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 143
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 97 PSVATGLAPSTGKRPRSRRTWTGVVA 20
P+ AT +APSTG + + W +++
Sbjct: 2 PTSATAVAPSTGSVQKKDQDWRAILS 27
>At3g09140.1 68416.m01075 expressed protein contains Pfam profile
PF05056: Protein of unknown function (DUF674);
expression supported by MPSS
Length = 473
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 137 SSNPTLRS-VPLAATLRRYGPGTLYGKTAPFK 45
SS +RS +PL+ TL+ G G + G+T FK
Sbjct: 251 SSLQMIRSRIPLSPTLQGSGDGAVPGQTITFK 282
>At2g24700.1 68415.m02951 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 555
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 188 ARPIANKYREGKLKRTLKREFKST 259
A PI R+G+ +T+K+E+ ST
Sbjct: 430 AEPINEDIRQGQCSQTIKQEYVST 453
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,423,221
Number of Sequences: 28952
Number of extensions: 115700
Number of successful extensions: 369
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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