Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0686
(540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 29 2.4
SB_5499| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42) 28 4.2
SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 28 5.6
SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4) 28 5.6
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 27 7.4
SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/95 (24%), Positives = 30/95 (31%)
Frame = +1
Query: 31 TQPDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPSGGIR 210
TQP P + S V S+ T + + S DG+ A P P I
Sbjct: 391 TQPGGPTVTTPKSSALTGVTARKPSMPGPTSSPGATQGSTDGVVSAKPPTKKTTPQSVIP 450
Query: 211 PNSNVSTQTXXXXXXXXXKQRGKPGVRSPAPANKQ 315
P + T Q GV S P K+
Sbjct: 451 PGKTTAPTTKPPGSPAGSTQGPTDGVLSAKPPTKK 485
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 29.1 bits (62), Expect = 2.4
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Frame = +1
Query: 1 LTPNPIFIRGT--QPDAPPSMFIQH----SPQNTVHHNSVSVACATPTTA--KPRASADG 156
L P ++RG +P++ PS + + Q+T+ +N+ VA + +A KP S
Sbjct: 656 LLPYERYVRGQLHKPESSPSSPEDYPDPTNTQSTIENNNNEVASSVKGSAVVKPMVSVKA 715
Query: 157 ISKAPRPLSNILPSGGIRPNSNVSTQTXXXXXXXXXKQRGKPGVR-SPAPANKQDAV 324
+AP L P G+ + + S T GKP V+ P + QD V
Sbjct: 716 EERAPTSLVTSRPGTGLDKSGHQSRAT----PPVTLSLAGKPTVKVGPTTHHLQDVV 768
>SB_5499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Frame = +1
Query: 46 PPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPR---PLSNILPSGGIRPN 216
PP + + + Q H +++ C T KPR S P P +L SG +
Sbjct: 2 PPRIVSEPTDQVATIHQNITFVCDTQGVPKPRVSWQNSQGRPADRDPRITVLQSGALHIR 61
Query: 217 SNVST 231
V T
Sbjct: 62 GGVPT 66
>SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)
Length = 737
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 61 IQHSPQNTVHHNSVSVACATPTTAKPRASADG 156
+ + +NTV + C TPT +K + S DG
Sbjct: 489 MNYQEKNTVVSQKIFSGCGTPTLSKSKRSTDG 520
>SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 93 QQRERSVCDAYYSKAACFCRWDFEGS 170
QQRERS D +S+ FC+ FEG+
Sbjct: 140 QQRERS--DTSFSRTCLFCKQHFEGN 163
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 49 PSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPS 198
PS I H P + +HH S + + +++ +S S + LS+ L S
Sbjct: 362 PSSIIHHHPSSIIHHPSSIIHHPSSSSSSLSSSLSSSSSSSSSLSSSLSS 411
>SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)
Length = 777
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 70 SPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPS 198
S +NT H + S T A S GISKAP L LP+
Sbjct: 604 SDENTKHQAADSTISVDDTYANNGNSEGGISKAPCKLRQHLPA 646
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 81 HCPPQQRERSVCDAYYSKAAC 143
HC P + S+C YY AC
Sbjct: 266 HCVPNKEGNSICSKYYRCKAC 286
>SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 6 PQPYIHKGNSTGRAPLHVHT 65
P Y+H N+T +A L+VHT
Sbjct: 53 PTRYVHTYNTTSQATLYVHT 72
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 25 RGTQPDAPPSMFIQHS-PQNTVHHNSVSVACATPTTAKPRASADGISKAP 171
+G P P + P++T +V+ + AT TT+KP A SK P
Sbjct: 2777 KGRPPSKPAGTGSSSAKPKDTPTATTVATSGATTTTSKPGKEAASSSKGP 2826
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.308 0.124 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,648,503
Number of Sequences: 59808
Number of extensions: 300775
Number of successful extensions: 644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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