Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0686
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 99   AVVVDSVLRRVLYEHGGGRVRLSSPYEYR 13
            A +V+S LR    ++  GRV   +P+E+R
Sbjct: 961  AFIVNSNLRLTFSKNVQGRVGFVTPFEHR 989


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = +1

Query: 142 ASADGISKAPRPLSNILPSGGIRPNSNVSTQTXXXXXXXXXKQRGKPGVRSPAPANKQD 318
           A++  +   P   +N  PS   R  S  S+ T            G+P  R+    NKQ+
Sbjct: 494 AASTAVIHEPVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQE 552


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +1

Query: 85  VHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPSGGIRPNSNVS 228
           +HH  V+   A+P   K   S+ G S     LS  L S    PN  VS
Sbjct: 341 MHHLHVAKQMASPEPPKSSESSTGSSIPKLNLSTALMSQP-PPNFGVS 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.124    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,947
Number of Sequences: 438
Number of extensions: 2589
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.2 bits)