Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0686
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate carboxylase/o...    34   0.070
At5g53040.1 68418.m06588 RWP-RK domain-containing protein contai...    29   2.0  
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    29   2.0  
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re...    28   4.6  
At3g60490.1 68416.m06765 AP2 domain-containing transcription fac...    27   6.1  
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa...    27   6.1  

>At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit
           N-methyltransferase-related contains weak similarity to
           Swiss-Prot:P94026 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (Ribulose-
           bisphosphate-carboxylase]-lysine N-methyltransferase,
           RuBisCO methyltransferase, RuBisco LSMT, rbcMT)
           [Nicotiana tabacum]
          Length = 483

 Score = 33.9 bits (74), Expect = 0.070
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +1

Query: 94  NSVSVACATPT-TAKPRASADGISKAPRPLSNIL--PSGGIRPNSNVSTQT 237
           +SVS+   T T  +KP+   +GI  APRP SN+L     G+RP    S +T
Sbjct: 3   SSVSLQFLTNTFISKPQGFCNGIVSAPRPRSNLLRDRQNGVRPIKVASIET 53


>At5g53040.1 68418.m06588 RWP-RK domain-containing protein contains
           Pfam profile: PF02042 RWP-RK domain
          Length = 256

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +1

Query: 52  SMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPSGGIRPNSNVST 231
           S+F+Q   QN++HH     +       +P +  D + K P PL ++L    ++PN+ +  
Sbjct: 18  SLFLQQMDQNSLHHLD---SPKIENEYEPDSLYDMLDKLP-PLDSLLDMEDLKPNAGLHF 73

Query: 232 Q 234
           Q
Sbjct: 74  Q 74


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
           domain-containing protein similar to eukaryotic protein
           synthesis initiation factor [Homo sapiens] GI:3941724;
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 1544

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
 Frame = +1

Query: 7   PNPIFIR-GTQPDAPPSMFIQHSPQNTVHHNSV-----SVACATPTTAK--PRASADGIS 162
           P P+ +  G  P  PP +F Q  P + +HH  +         ATP  A+  P+    G+ 
Sbjct: 112 PMPMALSMGNTPQIPPQVFYQGHPPHPMHHQGMMHQAQGHGFATPMGAQIHPQLGHVGVG 171

Query: 163 KAPR-PLSNILPSGGIRPNSNVSTQTXXXXXXXXXKQRGKP 282
            +P+ P       GG R  + V              +RG P
Sbjct: 172 LSPQYPQQQGGKYGGARKTTPVKITHPDTHEELRLDRRGDP 212


>At3g27550.1 68416.m03443 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 491

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 34  QPDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKA 168
           + DAPP+ +I  S  +   + +VS + +  +  +  +S DGI+ +
Sbjct: 432 EEDAPPANYISSSDDDEDENRTVSASSSKQSRFRNNSSRDGINNS 476


>At3g60490.1 68416.m06765 AP2 domain-containing transcription factor
           TINY, putative similar to transcription factor TINY
           (GI:1246403)  [Arabidopsis thaliana]
          Length = 256

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 79  NTVHH--NSVSVACATPTTAKP-RASADGISKAPRPLSNILPSGGIRPNSNVS 228
           +  HH  N VSV  AT +++    +S+D  S + R L     SGG R  SNVS
Sbjct: 10  SATHHQDNIVSVITATISSSSVVTSSSDSWSTSKRSLVQDNDSGGKRRKSNVS 62


>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
           profiles PF00085: Thioredoxin, PF00515: TPR Domain;
           similar to tetratricopeptide repeat protein 2
           (GI:7248701) [Drosophila melanogaster]; similar to DnaJ
           homolog subfamily C member 7 (Tetratricopeptide repeat
           protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
           [Homo sapiens]
          Length = 699

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 70  SPQNTVHHNSVSVACATPTTAKP---RASADGISKAPRPLSNILPSGGIRPNSNV 225
           S  N +   S S   ++ + ++P    +S+   S AP   +N+LP+G I P+  +
Sbjct: 95  SGNNNLRPRSDSATTSSSSHSQPLLSSSSSSATSPAPTSPANVLPTGNICPSGKI 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.308    0.124    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,967,378
Number of Sequences: 28952
Number of extensions: 197064
Number of successful extensions: 381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)