Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0685
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.4  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   6.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.0  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    25   7.9  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   7.9  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 137 PTTAKPRASADGISKAPRPLSNILPSGGIRPNSNVSTQT 253
           PTT     S    S +P P S+   +  +  +SN  T T
Sbjct: 519 PTTVSTSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTT 557


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 113 SVSVACATPTTAKPRASADGISKAPRPLSNILPSGGIR 226
           S+S +   P+ AKP    +G  K P PLS   P+  IR
Sbjct: 225 SLSRSAELPSKAKPMEINNGYRKKPSPLS---PNSSIR 259


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 10  TRLTPNPXFIRGTQPGRAPLHVHTALA 90
           T  TPN  ++ GTQP RA      ALA
Sbjct: 445 TIYTPNFHYLEGTQPARAAKWCAPALA 471


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 684 GLPRECICCTIDMVC 640
           GLPR  +C T++ VC
Sbjct: 76  GLPRSIVCTTVNKVC 90


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 671 NVFVAPLIWFVASQRWAESEYLVACPASFL 582
           N  +APL + +A+    E+ YL  C A FL
Sbjct: 273 NEILAPLYYVLATDPTYENYYLCECDAFFL 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,448
Number of Sequences: 5004
Number of extensions: 40661
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)