Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0685
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_5499| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)          28   6.3  
SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.3  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            28   8.4  
SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)               28   8.4  

>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 346 DEQNAASDPTAETTIVSDELVRSDGADNERARQTGSEQE 462
           D++N  +    E     D LV+++  D ERA ++G+E +
Sbjct: 422 DDENVDNKKAEEKLKNGDHLVKTESKDAERAAESGNESD 460


>SB_5499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +2

Query: 62  PPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPR---PLSNILPSGGIRPN 232
           PP +  + + Q    H +++  C T    KPR S       P    P   +L SG +   
Sbjct: 2   PPRIVSEPTDQVATIHQNITFVCDTQGVPKPRVSWQNSQGRPADRDPRITVLQSGALHIR 61

Query: 233 SNVST 247
             V T
Sbjct: 62  GGVPT 66


>SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)
          Length = 737

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 77  IQHSPQNTVHHNSVSVACATPTTAKPRASADG 172
           + +  +NTV    +   C TPT +K + S DG
Sbjct: 489 MNYQEKNTVVSQKIFSGCGTPTLSKSKRSTDG 520


>SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 109 QQRERSVCDAYYSKAACFCRWDFEGS 186
           QQRERS  D  +S+   FC+  FEG+
Sbjct: 140 QQRERS--DTSFSRTCLFCKQHFEGN 163


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 65  PSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPS 214
           PS  I H P + +HH S  +   + +++   +S    S +   LS+ L S
Sbjct: 362 PSSIIHHHPSSIIHHPSSIIHHPSSSSSSLSSSLSSSSSSSSSLSSSLSS 411


>SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)
          Length = 777

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +2

Query: 86  SPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPS 214
           S +NT H  + S      T A    S  GISKAP  L   LP+
Sbjct: 604 SDENTKHQAADSTISVDDTYANNGNSEGGISKAPCKLRQHLPA 646


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,463,726
Number of Sequences: 59808
Number of extensions: 367293
Number of successful extensions: 2666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2663
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)