Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0685
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate carboxylase/o...    34   0.10 
At5g17300.1 68418.m02026 myb family transcription factor similar...    31   0.56 
At5g53040.1 68418.m06588 RWP-RK domain-containing protein contai...    29   3.0  
At4g26960.1 68417.m03879 expressed protein                             29   3.0  
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re...    28   6.8  
At3g60490.1 68416.m06765 AP2 domain-containing transcription fac...    27   9.0  
At3g58050.1 68416.m06471 expressed protein                             27   9.0  
At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase...    27   9.0  
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa...    27   9.0  

>At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit
           N-methyltransferase-related contains weak similarity to
           Swiss-Prot:P94026 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (Ribulose-
           bisphosphate-carboxylase]-lysine N-methyltransferase,
           RuBisCO methyltransferase, RuBisco LSMT, rbcMT)
           [Nicotiana tabacum]
          Length = 483

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 110 NSVSVACATPT-TAKPRASADGISKAPRPLSNIL--PSGGIRPNSNVSTQT 253
           +SVS+   T T  +KP+   +GI  APRP SN+L     G+RP    S +T
Sbjct: 3   SSVSLQFLTNTFISKPQGFCNGIVSAPRPRSNLLRDRQNGVRPIKVASIET 53


>At5g17300.1 68418.m02026 myb family transcription factor similar to
           CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
           profile PF00249: Myb-like DNA-binding domain
          Length = 387

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 21/45 (46%), Positives = 28/45 (62%)
 Frame = -1

Query: 437 ARSLSAPSDRTSSSLTIVVSAVGSDAAFCSSDWPHPVY*LEPETS 303
           +RS+S PS+R + S T V+S VGS+ A CS D   P   L P +S
Sbjct: 145 SRSVS-PSERDTQSPTSVLSTVGSE-ALCSLDSSSPNRSLSPVSS 187


>At5g53040.1 68418.m06588 RWP-RK domain-containing protein contains
           Pfam profile: PF02042 RWP-RK domain
          Length = 256

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +2

Query: 68  SMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPSGGIRPNSNVST 247
           S+F+Q   QN++HH     +       +P +  D + K P PL ++L    ++PN+ +  
Sbjct: 18  SLFLQQMDQNSLHHLD---SPKIENEYEPDSLYDMLDKLP-PLDSLLDMEDLKPNAGLHF 73

Query: 248 Q 250
           Q
Sbjct: 74  Q 74


>At4g26960.1 68417.m03879 expressed protein 
          Length = 156

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 623 PIAGMPQTISMVQQIHSLGSPWGP 694
           PIA  PQTI+M Q  H L   +GP
Sbjct: 88  PIAATPQTITMDQMPHLLSKIYGP 111


>At3g27550.1 68416.m03443 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 491

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 44  ELNRDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKA 184
           E   DAPP+ +I  S  +   + +VS + +  +  +  +S DGI+ +
Sbjct: 430 EDEEDAPPANYISSSDDDEDENRTVSASSSKQSRFRNNSSRDGINNS 476


>At3g60490.1 68416.m06765 AP2 domain-containing transcription factor
           TINY, putative similar to transcription factor TINY
           (GI:1246403)  [Arabidopsis thaliana]
          Length = 256

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 95  NTVHH--NSVSVACATPTTAKP-RASADGISKAPRPLSNILPSGGIRPNSNVS 244
           +  HH  N VSV  AT +++    +S+D  S + R L     SGG R  SNVS
Sbjct: 10  SATHHQDNIVSVITATISSSSVVTSSSDSWSTSKRSLVQDNDSGGKRRKSNVS 62


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 44   ELNRDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGI 175
            ELN  APP     +    ++ H S  V  +T + +KP  S DGI
Sbjct: 1131 ELNCLAPPETQTVNEDSFSLFHFSGPVGLSTGSKSKPAHSKDGI 1174


>At2g43880.1 68415.m05455 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 4 [Lycopersicon
           esculentum] GI:2459815; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 394

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 594 WACNKVLRLCPSLGCHKPYQWCNKYILLG 680
           W+C K    CP       + WCN  +L G
Sbjct: 135 WSCRKKGSHCPQGARSISFSWCNNVLLSG 163


>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
           profiles PF00085: Thioredoxin, PF00515: TPR Domain;
           similar to tetratricopeptide repeat protein 2
           (GI:7248701) [Drosophila melanogaster]; similar to DnaJ
           homolog subfamily C member 7 (Tetratricopeptide repeat
           protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
           [Homo sapiens]
          Length = 699

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 86  SPQNTVHHNSVSVACATPTTAKP---RASADGISKAPRPLSNILPSGGIRPNSNV 241
           S  N +   S S   ++ + ++P    +S+   S AP   +N+LP+G I P+  +
Sbjct: 95  SGNNNLRPRSDSATTSSSSHSQPLLSSSSSSATSPAPTSPANVLPTGNICPSGKI 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,277,286
Number of Sequences: 28952
Number of extensions: 244481
Number of successful extensions: 769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)