Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0684
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 126 5e-30
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 124 2e-29
05_02_0037 + 5883285-5884292 31 0.28
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 31 0.38
08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007 28 3.5
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 4.6
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 27 6.1
10_08_0147 + 15218150-15218401,15218569-15218643,15219099-152192... 27 8.1
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 27 8.1
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 27 8.1
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 126 bits (305), Expect = 5e-30
Identities = 62/129 (48%), Positives = 75/129 (58%)
Frame = +3
Query: 33 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 212
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 213 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 392
YGKPK G+ QLK RN +S+AEE +SYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 393 VAQDCLYKY 419
V +D YKY
Sbjct: 121 VNEDSTYKY 129
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 124 bits (300), Expect = 2e-29
Identities = 61/128 (47%), Positives = 74/128 (57%)
Frame = +3
Query: 36 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 215
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 216 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWV 395
YGKPK G+ QLK RN +S+AEE +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 396 AQDCLYKY 419
+D YKY
Sbjct: 227 NEDSTYKY 234
>05_02_0037 + 5883285-5884292
Length = 335
Score = 31.5 bits (68), Expect = 0.28
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +2
Query: 116 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 268
AV ++ AP ++ +A +SP C R CC +P + WWP+ GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 31.1 bits (67), Expect = 0.38
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 344 FLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 216
+++ G +V G++ V +ALGL ++GT W L T +D++
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629
>08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007
Length = 603
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 383 AQHTETAATTANTFLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAATT 234
A E AA++ + L L + + +D A+ A G S WTLA T
Sbjct: 292 AAEVELAASSKKSKLKQRLPHTKQFRFLDHAAINDAPDGEQSKWTLATLT 341
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 239 WPQASSC*G-CHLWQAQEPWCQPVEAH 316
WPQ CHL Q +EPW ++AH
Sbjct: 46 WPQDQRWYQHCHLQQEEEPWRCQIKAH 72
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 27.1 bits (57), Expect = 6.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 126 QLTRMHRAPRPTRPD 170
QLTR+H P P RPD
Sbjct: 73 QLTRLHPPPEPPRPD 87
>10_08_0147 +
15218150-15218401,15218569-15218643,15219099-15219208,
15219299-15219560
Length = 232
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 157 PQGRTKPED*ATVLNKVMLYSESVCDVVA 243
P G +P A +V+LY E +C+ VA
Sbjct: 199 PPGLPRPVSKAASSTRVLLYEEELCEAVA 227
>10_07_0081 - 12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 164 PCGPGSAVHTSQLTVLPYPH 105
PC P S + +S + ++P PH
Sbjct: 989 PCSPKSLIESSPVKIVPLPH 1008
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 17 ATGC*DGCLQIYS 55
A GC DGCLQ+Y+
Sbjct: 667 AVGCEDGCLQVYT 679
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,411,053
Number of Sequences: 37544
Number of extensions: 263219
Number of successful extensions: 612
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -