Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0684
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             150   5e-37
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   1.6  
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)                   29   2.1  
SB_23720| Best HMM Match : GARS_C (HMM E-Value=4.2)                    28   3.6  
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 28   3.6  
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_7343| Best HMM Match : EGF (HMM E-Value=0)                          27   6.3  
SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)                 27   8.3  
SB_56634| Best HMM Match : Pox_A32 (HMM E-Value=0.011)                 27   8.3  
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   27   8.3  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  150 bits (363), Expect = 5e-37
 Identities = 71/129 (55%), Positives = 86/129 (66%)
 Frame = +3

Query: 33  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 212
           MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60

Query: 213 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 392
                             ATYGKP + GVN+LK  R+L+S+AEE            +SYW
Sbjct: 61  IYRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYW 120

Query: 393 VAQDCLYKY 419
           V QD +YKY
Sbjct: 121 VGQDSIYKY 129


>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2492

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 395  NPVRAQHTETAATTANTFLSNGLKVARGLQLVDT-MALGLAISGTLSNWTLAATTSHTDS 219
            NP+ +QH+ + ++T N+  ++   + RG+  VDT +  G+ +    S  TL    S   S
Sbjct: 850  NPLSSQHSGSTSSTENSISNHTRPMWRGVAPVDTDVTPGVTLKAPTSKGTLYVIASGPQS 909


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 90  RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 203
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
          Length = 1115

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 215 IQNPCATWWPQASSC*GCHLWQAQEPWCQPV-EAHAQPSIHC*GTCWPSLRRSPCVELLL 391
           I++P    +P  S+C   H++ ++   CQ   E  + P+     +C PS  + P V L +
Sbjct: 357 IKHPVTLDYPICSTCPQGHIYNSEARGCQKCPEGQSAPAGANVSSCSPSDDKVPMVPLHV 416

Query: 392 GC 397
            C
Sbjct: 417 SC 418


>SB_23720| Best HMM Match : GARS_C (HMM E-Value=4.2)
          Length = 105

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -3

Query: 377 HTETAATTANTFLSNGLKVARGLQLVDT---MALGLAISGTLSNWTLAATTSHTDSEYNI 207
           HT TA T        G     G  +  T     LG AIS T + +TL    SHT + Y +
Sbjct: 25  HTGTAYTLGPAISHTGTAYTLGPAVSHTGTAYTLGPAISHTGTAYTLGPAVSHTGTAYTL 84


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +2

Query: 80  RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCA 232
           RCY   VA   C  ++  P +D+      A +    P T ++PC    C  QNPC+
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS 757


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 122 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCA 232
           P  D+      AH+    P T ++PC    C  QNPC+
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS 276


>SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -2

Query: 384 SSTHGDRRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHP*QLDACGHHVAHG 223
           ++THG+R +    V Q  IE       G +HG W  H W    L   G    HG
Sbjct: 71  TTTHGERWSLPWAVAQPRIE-----EDGPYHGRWHNHPWRKMVLTMGGGTTTHG 119



 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -2

Query: 384 SSTHGDRRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHP*QLDACGHHVAHG 223
           ++THG+R +    V Q  IE       G +HG W  H W    L   G    HG
Sbjct: 159 TTTHGERWSLPWAVAQPRIE-----EDGPYHGRWHNHPWRKMVLTMGGGTTTHG 207


>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1233

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 332 GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFSTVA 186
           G      L ++DT   G+  + T+S  TL  T +HT +  +ITL  + A
Sbjct: 526 GSDTTSSLIIIDTTTSGITPTSTISVTTLTTTRTHTTT--SITLHPSSA 572


>SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)
          Length = 942

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 135 ESTDGTAIPSHATKNA*HRSVFSYTTPEYI 46
           ES+DG  +P   T     R V  + TPE+I
Sbjct: 519 ESSDGEPVPQQRTGARFDREVNEFITPEFI 548


>SB_56634| Best HMM Match : Pox_A32 (HMM E-Value=0.011)
          Length = 684

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +3

Query: 99  LRVRVW---QYRQLTRMHRAPRPTRPDKAR 179
           L VR+W   + R+ TR  RAP   RPD  R
Sbjct: 410 LHVRLWLPSRQRRATRESRAPNRPRPDLTR 439


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 411 INNLVQPSKSSTHGDRRNDGQHVPQQWIEGCAW 313
           + NL  P +  T G     G + P+ W+ GCAW
Sbjct: 423 LQNLYIPPEGVT-GIPLGVGNYGPEAWLLGCAW 454


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,243,592
Number of Sequences: 59808
Number of extensions: 300806
Number of successful extensions: 685
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)