Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0684
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   142   1e-34
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    30   0.77 
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    30   0.77 
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    29   1.0  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in bl...    27   4.1  
Z69384-6|CAA93414.3|  499|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    27   7.2  
Z69646-8|CAA93477.3|  896|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z50794-7|CAA90661.3|  896|Caenorhabditis elegans Hypothetical pr...    26   9.5  
L29438-1|AAA98750.1|  684|Caenorhabditis elegans endoprotease pr...    26   9.5  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  142 bits (343), Expect = 1e-34
 Identities = 64/129 (49%), Positives = 83/129 (64%)
 Frame = +3

Query: 33  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 212
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ   
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 213 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 392
                              TYGKPK+HGVN+LK  ++ Q++AE             +SYW
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120

Query: 393 VAQDCLYKY 419
           VA+D  YK+
Sbjct: 121 VAEDSTYKF 129


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -3

Query: 368 TAATTANTFLSNGLKVARGL-QLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFST 192
           TA+TT+ +  S  L  ++     V T      ISG   + T   TT+   SE + T  ST
Sbjct: 372 TASTTSGSLFSTSLGSSQSPGSSVSTTPGPSTISGISQSTTSGPTTT---SEPSTTSGST 428

Query: 191 VA*SSGFVRPCGPGSAVHTSQLT 123
           V+ +SG     GP + + T+Q T
Sbjct: 429 VSDTSGPSTTSGPSTTLGTTQST 451


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y116F11B.3 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 332  GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFS 195
            GLKVAR   LVD   +G+ + G ++  T  ATT+   + Y  TL+S
Sbjct: 972  GLKVAR--DLVD-QNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -3

Query: 182 SSGFVRPCGPGSAVHTS---QLTVLPYPHTQQKTHNIAQFFPIQLLNISVGTH 33
           S+   RP   GS+  T       V+  PHT   T N    F + LLN+S+  H
Sbjct: 526 STTTTRPSNVGSSASTPIPLPKRVIKLPHTHTSTQNAQYSFMLLLLNVSLFFH 578


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 155
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 155
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


>U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 10 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +2

Query: 218 QNPCATWWPQASSC*GCHLWQAQEPWCQPVEAHAQPSIHC*GTCWPSLRRS 370
           QNPCA    Q S    C   Q  +P  Q     AQP   C   C P+ + S
Sbjct: 275 QNPCACQQAQPS----CDCAQQAQPTFQVQVQQAQPINQCVPACQPACQSS 321


>Z69384-6|CAA93414.3|  499|Caenorhabditis elegans Hypothetical
           protein T11G6.4 protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = -3

Query: 377 HTETAATTANTFLSNGLKVARGLQLVDTM-----ALGLAISGTLSN 255
           HT T+ +T   F+ +     R L ++DT      A+GL +SGTL +
Sbjct: 56  HTWTSNSTGTPFMESEEHATRFLGVLDTSFMITYAIGLFVSGTLGD 101


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
           family protein 2 protein.
          Length = 1551

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 116 PYPHTQQKTHNIAQFFPIQLL 54
           PYP T + T N+A F P+ LL
Sbjct: 59  PYPCTVKDTFNVALFMPLFLL 79


>Z69646-8|CAA93477.3|  896|Caenorhabditis elegans Hypothetical
           protein F59F5.7 protein.
          Length = 896

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 119 VPSVDSYAPRSQAHKAGQSPKTR 187
           +P  D   PRS++H AG  P+++
Sbjct: 92  LPRFDENEPRSRSHSAGTKPRSQ 114


>Z50794-7|CAA90661.3|  896|Caenorhabditis elegans Hypothetical
           protein F59F5.7 protein.
          Length = 896

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 119 VPSVDSYAPRSQAHKAGQSPKTR 187
           +P  D   PRS++H AG  P+++
Sbjct: 92  LPRFDENEPRSRSHSAGTKPRSQ 114


>L29438-1|AAA98750.1|  684|Caenorhabditis elegans endoprotease
           protein.
          Length = 684

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -3

Query: 311 LQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFS-TVA*SSGFVRPCGPGSAVHT 135
           L +V+++    A +GT  +WTL    +   ++    ++S T A S G +     GS+ H 
Sbjct: 600 LLMVESVTTNPAATGTFHDWTLLLYGTADPAQSGDPVYSATPATSQGVL---SRGSSTHF 656

Query: 134 SQLTVLPYPHTQQK 93
           S      YP  +Q+
Sbjct: 657 SDTNHHRYPPRRQR 670


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,375
Number of Sequences: 27780
Number of extensions: 209073
Number of successful extensions: 482
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)