Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0684
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           124   2e-29
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           124   2e-29
At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloropla...    29   1.7  
At5g11230.1 68418.m01312 phosphate translocator-related low simi...    29   1.7  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    27   3.9  
At3g18050.1 68416.m02296 expressed protein                             27   3.9  
At1g70530.1 68414.m08117 protein kinase family protein contains ...    27   6.8  
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff...    26   9.0  
At3g53960.1 68416.m05961 proton-dependent oligopeptide transport...    26   9.0  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  124 bits (299), Expect = 2e-29
 Identities = 62/129 (48%), Positives = 75/129 (58%)
 Frame = +3

Query: 33  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 212
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 213 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 392
                               YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 393 VAQDCLYKY 419
           + +D  YKY
Sbjct: 121 LNEDSTYKY 129


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  124 bits (299), Expect = 2e-29
 Identities = 62/129 (48%), Positives = 75/129 (58%)
 Frame = +3

Query: 33  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 212
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 213 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 392
                               YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 393 VAQDCLYKY 419
           + +D  YKY
Sbjct: 121 LNEDSTYKY 129


>At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloroplast
           (ARA6) (THI1) (THI4) identical to SP|Q38814 Thiazole
           biosynthetic enzyme, chloroplast precursor (ARA6)
           {Arabidopsis thaliana}
          Length = 349

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -3

Query: 329 LKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDS--EYNITLFSTVA*SSGFVRPCG 156
           +K+   +   D +  G  + G ++NW L A   HT S  + N+     V  S G   P G
Sbjct: 179 VKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFG 238


>At5g11230.1 68418.m01312 phosphate translocator-related low
           similarity to phosphoenolpyruvate/phosphate translocator
           precursor [Mesembryanthemum crystallinum] GI:9295275,
           SP|P52178 Triose phosphate/phosphate translocator,
           non-green plastid, chloroplast precursor (CTPT)
           {Brassica oleracea}
          Length = 351

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 377 HTETAATTANTFLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAA 240
           H + A   AN+F +  L +A  L +  T AL + ++G + +W L A
Sbjct: 232 HLDYAIFGANSFCAFALNLAVFLLVGKTSALTMNVAGVVKDWLLIA 277


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 108 RVWQYRQLTRMHRAPRPTRPD 170
           ++W+Y  LTR++  P+   PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 171 CPALWAWERGAYESTDGTAIPSHATKNA*HRSVFSYTTPE 52
           CP L AW   AY +T  +   S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


>At1g70530.1 68414.m08117 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 646

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 326 SIHC*GTCWPSLRRSPCVELL 388
           ++H    CW +L RS CVE L
Sbjct: 189 TVHGLAQCWETLNRSGCVECL 209


>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 818

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 57  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRL 185
           +L  ++ S V RF   +  W Y+QLT+ +   R  R D   +L
Sbjct: 7   KLQEEEASSVTRFYNIILGWDYKQLTKENE--RKNRKDSKEKL 47


>At3g53960.1 68416.m05961 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 602

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 98  QKTHNIAQFFPIQLLNISVGTHLSSL 21
           +K H IA F  I L++I  G H  SL
Sbjct: 147 RKAHEIAFFIAIYLISIGTGGHKPSL 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,567,512
Number of Sequences: 28952
Number of extensions: 193819
Number of successful extensions: 416
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)